Basic Information
Locus ID:
Ag2G02341
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 274205516 | 274211717 | + | Ag2G02341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 68,295.65 Da | 53.55 | 90.98 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 125 | 155 | 2.3E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 125 | 163 | 8.63E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 178 | 407 | 7.85E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 116 | 303 | 7.8E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 442 | 544 | 1.7E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 336 | 431 | 2.1E-8 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 363 | 387 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 485 | 510 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 337 | 362 | 25.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 78 | - | - |
| Coils | Coil | Coil | 89 | 111 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54650.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017249633.1 | PREDICTED: F-box/LRR-repeat protein 17 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8W104 | F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana OX=3702 GN=FBL17 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164Z272 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018449 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.141634 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.233215 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.273053 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.267982 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.205783 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.040272 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.112936 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.267899 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.64542 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.759633 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.272115 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.03977 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.241265 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.783817 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.515495 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.636354 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.780037 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.23255 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.708661 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.645419 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.112455 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.494057 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.644547 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.121294 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.864015 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.570715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.064122 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.923529 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.952543 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.023072 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.043369 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.085149 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.965115 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.025876 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.1014 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.601648 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.328446 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.297261 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.439454 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.224513 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.807921 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.600942 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.336267 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.914539 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.743706 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.444387 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.896115 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8732 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19348 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000270 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g120340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31547, Sbi_jg57734 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25381 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019486 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31666, Sgl36971, Sgl54309, Sgl59653 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005532, gene:ENSEOMG00000024620 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3BG0020950, CQ.Regalona.r1.5AG0025640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30026300, pistato.v30292630 |
| Apiaceae | Apium graveolens | 1 | Ag2G02341 |
| Arecaceae | Cocos nucifera | 2 | COCNU_14G011830, contig69508027G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704535, gene-LOC103705978 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G04294, Ftri9G17912 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010227m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07800.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065280.2N, BniB08g068890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12780 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0446s00016.v1.0, Dusal.0915s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g40930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1197 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007913, Pov_00024670 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28970 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1208, AH05.3966, BH05.4058, CH01.1442, CH04.2217 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225130, gene-QOZ80_3BG0270380 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0433490.1, HORVU.MOREX.r3.5HG0509130.3 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000698, gene-QYE76_062926 |
| Poaceae | Oryza coarctata | 4 | Oco05G018530, Oco06G019300, Oco23G009880, Oco24G009560 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g43390.1, LOC_Os12g40860.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G149000, gene-BS78_08G135500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104447, Pt_Chr0704277, Pt_Chr0704286 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G009810, Chr04G018570, Chr04G024590, Chr06G019330 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G126000, Tel5E01G602300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG008940, gene_TRIDC5AG055340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G058400.2, TraesCS5A02G378400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb031170_P002, Zm00001eb051080_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20400, nbis-gene-44589 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25290, Zma_g3230 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2869 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02780 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1059, evm.TU.Scaffold_9_RagTag.955 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11295 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10680 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10331 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.168, evm.TU.utg000006l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013658 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1476, nbisL1-mrna-9935 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19766, nbisL1-mrna-5092 |
| Salicaceae | Populus euphratica | 2 | populus_peu15128, populus_peu32791 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607947, gene-LOC132610844 |
| Solanaceae | Solanum chilense | 2 | SOLCI001138300, SOLCI004278700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021027, gene-LOC107029439 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17340 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2317 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24020.v3.1 |