Basic Information
Locus ID:
Ag2G02316
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
ARP8
Description:
Belongs to the actin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 270511088 | 270528206 | - | Ag2G02316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 54,162.90 Da | 43.88 | 89.28 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 148 | 292 | 5.44348E-8 | - |
| Pfam | PF00022 | Actin | 193 | 473 | 1.0E-32 | IPR004000 |
| Pfam | PF12937 | F-box-like | 55 | 96 | 8.8E-8 | IPR001810 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 146 | 267 | 7.45E-11 | IPR043129 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 261 | 473 | 2.54E-42 | IPR043129 |
| SUPERFAMILY | SSF81383 | F-box domain | 54 | 123 | 1.31E-13 | IPR036047 |
| Gene3D | G3DSA:3.30.420.40 | - | 192 | 475 | 4.7E-51 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 43 | 120 | 2.0E-10 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 252 | 449 | 4.7E-51 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 295 | 378 | 4.7E-51 | - |
| SMART | SM00256 | fbox_2 | 57 | 97 | 5.1E-7 | IPR001810 |
| SMART | SM00268 | actin_3 | 145 | 484 | 7.1E-18 | IPR004000 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 51 | 97 | 12.226393 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56180.1 | actin-related protein 8. encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. | 0 |
| RefSeq | XP_017252705.1 | PREDICTED: actin-related protein 8 [Daucus carota subsp. sativus] | 0 |
| Q9FKT0 | Actin-related protein 8 OS=Arabidopsis thaliana OX=3702 GN=ARP8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J4ZXF1 | F-box domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_009916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.592983 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.921576 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.196169 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 21.470417 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.96324 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.471615 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 24.424778 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.736425 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.274942 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.361252 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.141837 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.059639 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.130556 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.43281 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 24.824446 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.978689 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.87009 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.126625 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.833046 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.608284 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.054514 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.028553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.266086 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.478127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.523619 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.581535 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.857156 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.940237 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.65279 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.82112 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.76333 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.623876 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.017254 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.357279 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.055194 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.228414 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.132683 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.116761 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.890665 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.054569 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.595258 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.06732 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 19.378107 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.415867 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.93302 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.533083 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 24.364471 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.309317 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.576151 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.442894 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21660 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12089, gene_2165 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018116 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18616, Sbi_jg37043 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4882 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008093, gene:ENSEOMG00000030083 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000070, CQ.Regalona.r1.4BG0026780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150870 |
| Apiaceae | Apium graveolens | 1 | Ag2G02316 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702345 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.894.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G12622, Ftri2G33224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G56180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013450m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g18030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g035010.2N, BniB05g035850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1568 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1731 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g08440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27480 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2121 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004314 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11743 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2642, BH09.2871, CH09.3078 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300200, gene-QOZ80_4BG0330940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0208800.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_035881, gene-QYE76_047216 |
| Poaceae | Oryza coarctata | 2 | Oco07G018650, Oco08G017940 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G275300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300343, Pt_Chr0300378 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G021650, Chr23G001520, Chr23G015100, Chr25G001150 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG075330, gene_TRIDC2BG082440 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G539700.1, TraesCS2B02G570000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6134 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22177 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.674, evm.TU.LG09.1840 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.14 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14630 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22383 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.7 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010724 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7962 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22544 |
| Salicaceae | Populus euphratica | 2 | populus_peu00019, populus_peu00022 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617404 |
| Solanaceae | Solanum chilense | 1 | SOLCI002465000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026085, gene-LOC114075243 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16946 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0592 |