Basic Information
Locus ID:
Ag2G02233
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 258435608 | 258437135 | - | Ag2G02233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 39,216.67 Da | 40.98 | 91.36 | 0.02 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61520.1 | photosystem I light harvesting complex gene 3. PSI type III chlorophyll a/b-binding protein (Lhca3*1) | 0 |
| RefSeq | XP_017246672.1 | PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Daucus carota subsp. sativus] | 0 |
| P27522 | Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6L5BEH4 | Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens OX=4045 GN=AG4045_022258 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 849.717102 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 862.666016 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 556.450745 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 664.085083 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 622.578491 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 612.800476 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 296.189911 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 147.165543 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1251.467163 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1316.606079 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1170.550537 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 984.870422 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1113.695435 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1411.963257 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1124.283203 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1117.006836 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1480.406494 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2128.949707 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3263.031982 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2235.442139 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2140.859375 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 671.46875 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 517.952332 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 768.194458 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1288.174072 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2349.793213 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2462.948242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3314.666016 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2223.811523 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9340.232422 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9191.260742 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9681.974609 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8290.723633 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3818.761963 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6688 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8504.013672 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11447.82129 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9631.439453 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6145.443848 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7873.427734 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5777.20166 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 244.016174 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 504.525696 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 332.219482 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 291.99939 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 253.481537 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 400.320831 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 225.562897 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 154.875595 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 149.54483 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19216 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8642 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035892 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39861, Sbi_jg55195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14467 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12359, Sgl17638 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017960, gene:ENSEOMG00000036011 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023110, CQ.Regalona.r1.1BG0001110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101810, pistato.v30112040 |
| Apiaceae | Apium graveolens | 3 | Ag2G02233, AgUnG00498, AgUnG01243 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G006920, COCNU_01G012850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718458, gene-LOC120112142 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2124.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11256 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023636m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03060.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g059370.2N, BniB04g020930.2N, BniB07g047370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2941, Ceq02G2954 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G3068, Cgl03G0479 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07640 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0027s00003.v1.0, Dusal.0027s00004.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g27440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.812 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008337, Pov_00008339 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30997 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2269, BH07.3989, CH06.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0544770, gene-QOZ80_6BG0498280 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021341 |
| Poaceae | Oryza coarctata | 2 | Oco03G004870, Oco04G005060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G189000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202120 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G007810, Chr0G005680, Chr10G017910, Chr11G004710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G331000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG028780 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G159800.1, TraesCS6B02G191500.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10052, nbis-gene-41037 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30808, Zma_g33057 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1073, evm.TU.LG22.814 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g16670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1678 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14367, nbisL1-mrna-3389 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10848, nbisL1-mrna-21435 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.905, evm.TU.utg000006l.965 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009805, Maker00013273 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13895 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15607, nbisL1-mrna-4633 |
| Salicaceae | Populus euphratica | 1 | populus_peu26841 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629504, gene-LOC132636547 |
| Solanaceae | Solanum chilense | 2 | SOLCI000988100, SOLCI005200100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002211, gene-LOC107007169 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.22943_chr05_-, gene_2174, gene_8148 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2682 |
| Zosteraceae | Zostera marina | 1 | Zosma01g28630.v3.1 |