Basic Information
Locus ID:
Ag2G02203
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Omega-hydroxypalmitate O-feruloyl
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 253790438 | 253792878 | - | Ag2G02203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 51,820.92 Da | 41.70 | 95.50 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02458 | Transferase family | 17 | 432 | 5.0E-72 | IPR003480 |
| Gene3D | G3DSA:3.30.559.10 | - | 10 | 218 | 1.6E-53 | IPR023213 |
| Gene3D | G3DSA:3.30.559.10 | - | 235 | 433 | 3.1E-45 | IPR023213 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27620.1 | HXXXD-type acyl-transferase family protein. | 0 |
| RefSeq | XP_017228243.1 | PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Daucus carota subsp. sativus] | 0 |
| A0A2R6PLK2 | Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 | 0 | |
| TrEMBL | A0A175Y953 | Omega-hydroxypalmitate O-feruloyl transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000388 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.796635 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.312618 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.152235 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.375049 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.350742 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.139261 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.462027 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.504642 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.481764 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.795918 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.671005 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.557866 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.659077 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.003708 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.763425 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 38.277382 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.190618 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.911235 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.015612 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.76607 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.123047 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 44.891808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 38.646004 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.683826 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.091125 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 14.640829 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.25686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.006078 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.410147 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.424271 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.909344 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.209614 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.292965 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.546491 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.057438 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.199732 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.920623 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.767147 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.011019 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.896295 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.179814 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.867402 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.715983 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.12923 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.267078 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.057822 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 31.332342 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 35.302406 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 43.680149 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10042, jg11848, jg22904, jg2568 |
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_17015, gene_20694, gene_20768, gene_23104, gene_25648 ... |
| Amaranthaceae | Atriplex hortensis | 2 | Ah023446, Ah035350 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g006980, BVRB_2g023460 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21467, Sbi_jg22350, Sbi_jg28768, Sbi_jg3185 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16277, Seu_jg6731 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000041, GOSA_00016480 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl11501, Sgl11573, Sgl16946, Sgl17070, Sgl62824, Sgl67439 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000016173, gene:ENSEOMG00000017776 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0008640, CQ.Regalona.r1.1AG0008660 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046860 |
| Apiaceae | Apium graveolens | 3 | Ag10G01299, Ag2G02203, Ag5G01431 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703758 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3409.V1.1, AsparagusV1_04.3410.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G13547, Ftri17G23164 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G27620.1, AT2G40230.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007633m.g.v1.0, Thhalv10016665m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g23840.v2.2, Sp4g22570.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g005130.2N, BniB03g017570.2N, BniB04g041910.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0101, Ceq03G0996 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0112, Cgl03G1079 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g08640, gene.Cymno11g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10916 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1898, evm.TU.LG06.615 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002500, Pov_00040564 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22440 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1094, BH02.1016, CH02.1124 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006350, gene-QOZ80_1BG0055070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049633 |
| Poaceae | Oryza coarctata | 3 | Oco01G000290, Oco02G000280, Oco02G011030 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01520.1, LOC_Os01g28474.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G094700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206635, Pt_Chr0206746 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025470, Chr03G002650, Chr05G003210, Chr08G002400 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G188700, Tel3E01G142200, Tel7E01G065600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG009530, gene_TRIDC2BG011620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G086300.1, TraesCS2B02G100500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126880_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-32357, nbis-gene-7201, nbis-gene-7202 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7460, Zma_g9803 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1695, evm.TU.LG05.146, evm.TU.LG10.1182 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03400 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60352.1, evm.TU.Scaffold_4_RagTag.935 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19031, nbisL1-mrna-25888, nbisL1-mrna-9048 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3301, nbisL1-mrna-7738 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1467, nbisL1-mrna-15354 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.227, evm.TU.utg000018l.431 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002783 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17497, nbisL1-mrna-3317 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11148, nbisL1-mrna-9274 |
| Salicaceae | Populus euphratica | 5 | populus_peu06575, populus_peu15257, populus_peu20453 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609031, gene-LOC132628055 |
| Solanaceae | Solanum chilense | 2 | SOLCI001448500, SOLCI006081600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016278, gene-LOC107021276 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25601_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1614 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06550.v3.1 |