Basic Information
Locus ID:
Ag2G02175
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RING FYVE PHD zinc finger superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 250728446 | 250736527 | - | Ag2G02175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 131,844.31 Da | 41.62 | 70.78 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 356 | 418 | 4.87E-9 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 430 | 1.7E-12 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 472 | - | - |
| Coils | Coil | Coil | 729 | 749 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02890.2 | - | 0 |
| RefSeq | XP_017243434.1 | PREDICTED: uncharacterized protein LOC108215441 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4IYH6 | ASI1-immunoprecipitated protein 2 OS=Arabidopsis thaliana OX=3702 GN=AIPP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166ATC5 | PHD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010526 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.056194 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.576052 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.206882 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.880035 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.064497 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.778316 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.529576 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.080501 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.192188 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.728189 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.712782 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.599462 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.48342 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.287849 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.925984 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.451146 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.095465 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.432354 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.240118 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.995283 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.64238 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.423293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.82059 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.732306 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.377111 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.435012 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.583372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.638662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.993089 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.353785 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.42442 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.263031 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.915631 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.288788 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.552508 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.707205 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.220186 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.531001 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.834072 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.930907 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.422251 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.416118 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.777416 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.251825 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.377755 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.355252 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.019141 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.201695 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.770473 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.308287 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10305, jg33876 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15018, gene_3451 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004266, Ah018286 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g049510, BVRB_5g106030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14804, Sbi_jg24497, Sbi_jg55587, Sbi_jg8341 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11701, Seu_jg26143 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001675, GOSA_00017996 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01054, Sgl06141, Sgl51324, Sgl56683 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000298, gene:ENSEOMG00000007776 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0007600, CQ.Regalona.r1.3BG0007680 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30010740, pistato.v30029230 |
| Apiaceae | Apium graveolens | 3 | Ag10G02410, Ag2G02175, AgUnG01062 |
| Arecaceae | Cocos nucifera | 4 | COCNU_08G008320, COCNU_09G003570, COCNU_10G002720 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103704691, gene-LOC103711790, gene-LOC103714039 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1946.V1.1, AsparagusV1_04.1680.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G07340, Ftri1G08090 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G02890.1, AT4G17850.1, AT5G16680.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012458m.g.v1.0, Thhalv10020044m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g01940.v2.2, Sp6g27480.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g046190.2N, BniB07g061000.2N, BniB08g008040.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1922 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g00070, gene.Cymno18g05790 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g07230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8348 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1832, evm.TU.LG05.749 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011300 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08738, Lb4G25369, Lb5G28979 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1386, AH05.3355, BH03.1496, BH03.1510, BH05.3359 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0389010, gene-QOZ80_5BG0435840 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0497230.1, HORVU.MOREX.r3.5HG0505460.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_047972, gene-QYE76_062432, gene-QYE76_062892 |
| Poaceae | Oryza coarctata | 3 | Oco23G005880, Oco24G005310, Oco24G005460 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g18770.1, LOC_Os12g24540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G069300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704254, Pt_Chr0704256 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G014850, Chr04G014860, Chr06G015290, Chr27G005030 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G493000, Tel5E01G578400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG045820, gene_TRIDC5AG052990 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G307300.1, TraesCS5A02G362100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb268880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34643 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24981 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.2262, evm.TU.LG07.1127, evm.TU.LG10.732 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00350 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.562, evm.TU.Scaffold_2_RagTag.1713 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18099, nbisL1-mrna-3471, nbisL1-mrna-7623 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1647, nbisL1-mrna-2603 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13965, nbisL1-mrna-5567 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.268, evm.TU.utg000012l.326 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005914, Maker00010886 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12764, nbisL1-mrna-8475 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-16449, nbisL1-mrna-666, nbisL1-mrna-667 |
| Salicaceae | Populus euphratica | 7 | populus_peu16247, populus_peu19205, populus_peu19206 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632267 |
| Solanaceae | Solanum chilense | 1 | SOLCI005952600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014536 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.12281_chr07_+, MSTRG.9798_chr05_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G2836, TC01G2837, TC01G2838, TC08G1215 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02940.v3.1 |