Basic Information
Locus ID:
Ag2G01995
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 234443962 | 234445375 | + | Ag2G01995 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 42,732.62 Da | 48.79 | 72.40 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 325 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 159 | 191 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 280 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 66 | 376 | 2.49E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 39 | 378 | 1.6E-81 | IPR015943 |
| SMART | SM00320 | WD40_4 | 242 | 280 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 378 | 66.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 87 | 8.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 325 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 191 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 238 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 147 | 91.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 280 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 289 | 11.277069 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23730.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017251524.1 | PREDICTED: WD repeat-containing protein RUP2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9FFA7 | WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A408 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018192 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.733431 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.493319 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.434914 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.567448 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.579782 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.467764 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.637031 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.193265 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.485801 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.816507 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.173276 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.317207 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.061266 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.519092 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.792692 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.742509 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.142643 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.762661 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.907526 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.215092 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.41212 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.21685 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.568161 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.310903 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.637715 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.147797 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.387827 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.237425 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.282744 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.553404 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.709949 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.447414 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.734682 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.333728 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.430138 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.421516 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.380962 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.997314 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.419046 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.22282 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 48.471252 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.674187 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.367974 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.518247 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 12.605221 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.20073 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.75318 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.12193 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.253141 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.906507 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10176, jg14000, jg14005, jg2310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182610 |
| Apiaceae | Apium graveolens | 1 | Ag2G01995 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719425 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2171.V1.1, AsparagusV1_07.2172.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G00460 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G23730.1, AT5G52250.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005519m.g.v1.0, Thhalv10015606m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g23490.v2.2, Sp6g14500.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g040570.2N, BniB08g017340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2185 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05810 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06580 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2713 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030293 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.110, BH07.103, CH03.4720 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0099170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0545090.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019532 |
| Poaceae | Oryza coarctata | 2 | Oco03G000680, Oco04G000630 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G010700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700684 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G101500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG004660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G039200.1.cds1, TraesCS6B02G054100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52335 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14830 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g14340, gene.Posoc02g16250, gene.Posoc06g04980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.129 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29212 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7240 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2152 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.26 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001439 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17644 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6273 |
| Salicaceae | Populus euphratica | 2 | populus_peu29272, populus_peu30631 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613860 |
| Solanaceae | Solanum chilense | 1 | SOLCI001590200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003271 |