Basic Information
Locus ID:
Ag2G01994
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 234430730 | 234434136 | + | Ag2G01994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 9,461.30 Da | 36.72 | 118.95 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00585.1 | 0 | |
| RefSeq | XP_017249930.1 | PREDICTED: uncharacterized protein LOC108220627 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YMM6 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 160.094498 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 179.46579 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 158.088867 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 148.924576 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 137.447815 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 120.405128 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 129.123581 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 92.725548 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 148.720383 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 169.164932 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 156.679169 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 176.317169 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 179.618713 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 200.943115 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 290.422394 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 334.616058 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 335.003387 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 283.864777 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 246.155197 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 253.59938 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 304.1185 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 331.976593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 388.662109 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 377.274628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 330.625519 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 248.08139 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 283.624664 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 240.861725 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 275.36972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 98.239227 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 115.506302 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 146.486877 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 159.46344 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 204.005966 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 110.640465 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 180.039398 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 148.548523 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 146.346405 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 173.709381 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 134.462723 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 116.871452 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 175.39473 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 283.764771 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 307.357178 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 245.070724 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 188.06485 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 290.332458 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 248.06427 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 199.528625 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 170.175385 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10175, jg33989 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023067 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g005800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4444, Sbi_jg49352 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000385 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11149, Sgl16552 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0005120, CQ.Regalona.r1.2BG0024380 |
| Apiaceae | Apium graveolens | 1 | Ag2G01994 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007590 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709911 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G27796 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00585.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026679m.g.v1.0, Thhalv10029049m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g00620.v2.2, Sp7g35520.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g088870.2N, BniB08g041710.2N, BniB08g042790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0154 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0163 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1518s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g12130 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040949 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03490, Lb2G11012 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.3092, CH03.3286 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0526100, gene-QOZ80_6BG0479960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0505770.1 |
| Poaceae | Oryza coarctata | 2 | Oco17G011810, Oco18G011710 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g38740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G271900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700177, Pt_Chr0700364 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G006310, Chr11G013250, Chr14G008890, Chr21G009070 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G580400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG053190, gene_TRIDC5BG057270 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G364100.1, TraesCS5B02G366000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb104680_P001, Zm00001eb320330_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31896, nbis-gene-50723 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29889, Zma_g32077 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.300 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1852 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10503 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.556 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013653 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9216 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7006 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631884 |
| Solanaceae | Solanum chilense | 1 | SOLCI000293400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012259 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_1450, gene_15245 |
| Zosteraceae | Zostera marina | 1 | Zosma01g22150.v3.1 |