halophFGD

Basic Information

Locus ID: Ag2G01985

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	233670512	233674887	+	Ag2G01985

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.15	55,452.04 Da	49.20	83.73	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12796	Ankyrin repeats (3 copies)	220	266	2.0E-7	IPR020683
Pfam	PF00023	Ankyrin repeat	178	208	6.4E-5	IPR002110
Pfam	PF13637	Ankyrin repeats (many copies)	46	97	9.6E-11	-
SUPERFAMILY	SSF57850	RING/U-box	313	374	6.75E-9	-
SUPERFAMILY	SSF48403	Ankyrin repeat	14	273	2.21E-47	IPR036770
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	304	385	9.0E-8	IPR013083
Gene3D	G3DSA:1.25.40.20	-	4	145	3.6E-30	IPR036770
Gene3D	G3DSA:1.25.40.20	-	146	269	1.3E-22	IPR036770
SMART	SM00248	ANK_2a	111	142	2.9	IPR002110
SMART	SM00248	ANK_2a	77	106	0.093	IPR002110
SMART	SM00184	ring_2	318	367	0.0087	IPR001841
SMART	SM00248	ANK_2a	177	206	2.0E-4	IPR002110
SMART	SM00248	ANK_2a	220	252	7.0E-5	IPR002110
SMART	SM00248	ANK_2a	44	73	3.6E-5	IPR002110
ProSiteProfiles	PS50088	Ankyrin repeat profile.	177	209	10.926559	IPR002110
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	318	368	9.686208	IPR001841
ProSiteProfiles	PS50088	Ankyrin repeat profile.	44	76	13.73111	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	177	206	10.258919	-
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	44	75	12.620211	-
ProSiteProfiles	PS50088	Ankyrin repeat profile.	220	246	10.73959	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	220	246	10.709951	-
ProSitePatterns	PS00518	Zinc finger RING-type signature.	333	342	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	461	480	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K19044 (E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana.
RefSeq	XP_017253872.1	PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Daucus carota subsp. sativus]
Swiss-Prot	Q4FE45	E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1
TrEMBL	A0A162A1Z9	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018184 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.110194	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.624857	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	9.391126	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.699377	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.738397	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.039162	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.423774	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.548114	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.040285	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.921221	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	20.976013	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	29.154902	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.057728	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	28.547739	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.218958	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.296215	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.2378	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	13.787434	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	14.159293	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.830462	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	18.919222	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	14.53614	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.702682	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.307748	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	12.533039	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.664646	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.994838	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	14.959366	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.333342	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	12.886878		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.635283		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.150006		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	23.622932		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.065065		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.908878		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.234297		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	11.30648		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	14.888002		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.390617	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.004214	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.790229	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	20.985806	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	23.595802	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	32.063919	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	35.109707	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.346502	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	28.430494	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.238243	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.768459	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.764293	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14018, jg15641, jg2320, jg33121, jg33991
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10845, gene_16110
Amaranthaceae	Atriplex hortensis	4	Ah014845, Ah018937, Ah020886, Ah020888
Amaranthaceae	Beta vulgaris	1	BVRB_8g192200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15542, Sbi_jg24823, Sbi_jg56365, Sbi_jg8691
Amaranthaceae	Salicornia europaea	2	Seu_jg19917, Seu_jg26804
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006565, GOSA_00022232
Amaranthaceae	Suaeda glauca	4	Sgl02028, Sgl07181, Sgl42510, Sgl47240
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003949, gene:ENSEOMG00000009536 ... gene:ENSEOMG00000030442, gene:ENSEOMG00000035201, gene:ENSEOMG00000042441, gene:ENSEOMG00000044404
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0002520, CQ.Regalona.r1.3BG0002650 ... CQ.Regalona.r1.5BG0017860, CQ.Regalona.r1.8AG0017670, CQ.Regalona.r1.8BG0018750
Anacardiaceae	Pistacia vera	2	pistato.v30182440, pistato.v30264420
Apiaceae	Apium graveolens	5	Ag10G00070, Ag10G02628, Ag10G02629, Ag10G02776, Ag2G01985
Arecaceae	Cocos nucifera	6	COCNU_01G004360, COCNU_07G006970, COCNU_08G006480 ... COCNU_08G006490, COCNU_10G005190, COCNU_11G009130
Arecaceae	Phoenix dactylifera	6	gene-LOC103699530, gene-LOC103707121, gene-LOC103710468 ... gene-LOC103711156, gene-LOC103714157, gene-LOC103716708
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2555.V1.1, AsparagusV1_08.401.V1.1 ... AsparagusV1_10.1084.V1.1
Asteraceae	Flaveria trinervia	4	Ftri3G08493, Ftri4G01708, Ftri4G32617, Ftri8G02497
Brassicaceae	Arabidopsis thaliana	2	AT5G07270.1, AT5G57740.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013287m.g.v1.0, Thhalv10013312m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g19420.v2.2, Sp6g35620.v2.2
Brassicaceae	Brassica nigra	4	BniB02g037110.2N, BniB02g053620.2N, BniB05g028470.2N ... BniB05g037360.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2098, Ceq03G1173, Ceq05G0537
Casuarinaceae	Casuarina glauca	3	Cgl02G2171, Cgl03G1280, Cgl05G0569
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g05030, gene.Cymno05g08760, gene.Cymno14g04760
Dunaliellaceae	Dunaliella salina	3	Dusal.0060s00020.v1.0, Dusal.0120s00020.v1.0 ... Dusal.0250s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g12330, gene.Thate04g24770, gene.Thate07g07340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11810
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2698, evm.TU.LG07.407
Plantaginaceae	Plantago ovata	3	Pov_00000667, Pov_00015626, Pov_00040925
Plumbaginaceae	Limonium bicolor	1	Lb4G24381
Poaceae	Echinochloa crus-galli	12	AH01.3149, AH06.482, AH07.3747, AH08.906, BH01.3508 ... BH06.165, BH07.1940, BH07.3571, CH06.154, CH07.3636, CH08.1047, CH09.292
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0114220, gene-QOZ80_2AG0148590 ... gene-QOZ80_2BG0168020, gene-QOZ80_2BG0203970, gene-QOZ80_6AG0507080, gene-QOZ80_6BG0459140, gene-QOZ80_8AG0624260, gene-QOZ80_8BG0651980
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0051110.1, HORVU.MOREX.r3.6HG0623070.1 ... HORVU.MOREX.r3.7HG0643200.1, HORVU.MOREX.r3.7HG0658700.1
Poaceae	Lolium multiflorum	6	gene-QYE76_012144, gene-QYE76_016444, gene-QYE76_026086 ... gene-QYE76_026289, gene-QYE76_032299, gene-QYE76_032308
Poaceae	Oryza coarctata	8	Oco03G023930, Oco04G024470, Oco11G001310, Oco12G001220 ... Oco15G005170, Oco16G004890, Oco19G008370, Oco20G008220
Poaceae	Oryza sativa	4	LOC_Os02g54860.1, LOC_Os06g03800.1, LOC_Os08g15840.5 ... LOC_Os10g37730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G309600, gene-BS78_01G359000 ... gene-BS78_07G100700, gene-BS78_10G021200
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0203812, Pt_Chr0303694, Pt_Chr0401920, Pt_Chr0402814 ... Pt_Chr0503012, Pt_Chr0503018
Poaceae	Sporobolus alterniflorus	14	Chr05G014770, Chr05G017530, Chr06G000630, Chr06G029210 ... Chr09G003030, Chr09G017950, Chr11G024010, Chr13G002140, Chr13G021810, Chr15G001870, Chr15G020400, Chr16G003470, Chr17G003170, Chr29G008820
Poaceae	Thinopyrum elongatum	5	Tel1E01G324900, Tel2E01G982100, Tel6E01G626500 ... Tel7E01G130600, Tel7E01G296500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG028640, gene_TRIDC1BG032970 ... gene_TRIDC6AG052980, gene_TRIDC6BG061580, gene_TRIDC7AG006520, gene_TRIDC7AG017780, gene_TRIDC7BG007140
Poaceae	Triticum aestivum	12	TraesCS1A02G189100.1, TraesCS1B02G196800.1 ... TraesCS1D02G187300.1, TraesCS4A02G429100.1, TraesCS6A02G352300.1, TraesCS6B02G385200.1, TraesCS6D02G335000.2, TraesCS7A02G060700.1, TraesCS7A02G145900.1, TraesCS7B02G048300.1, TraesCS7D02G055500.1, TraesCS7D02G147400.1
Poaceae	Zea mays	5	Zm00001eb021320_P001, Zm00001eb178040_P001 ... Zm00001eb192640_P001, Zm00001eb269490_P002, Zm00001eb378520_P001
Poaceae	Zoysia japonica	6	nbis-gene-34432, nbis-gene-36123, nbis-gene-44701 ... nbis-gene-51169, nbis-gene-51170, nbis-gene-8460
Poaceae	Zoysia macrostachya	5	Zma_g12784, Zma_g14600, Zma_g15541, Zma_g22715, Zma_g31271
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2654, evm.TU.LG11.1603, evm.TU.LG16.1442 ... evm.TU.LG23.879
Posidoniaceae	Posidonia oceanica	10	gene.Posoc01g19400, gene.Posoc01g36140, gene.Posoc02g03990 ... gene.Posoc02g24810, gene.Posoc03g02670, gene.Posoc06g11590, gene.Posoc06g11610, gene.Posoc06g16450, gene.Posoc07g12900, gene.Posoc09g02980
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.211, evm.TU.Scaffold_4_RagTag.147 ... evm.TU.Scaffold_11_RagTag.1356
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12655, nbisL1-mrna-13366, nbisL1-mrna-29198
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15068, nbisL1-mrna-16283, nbisL1-mrna-7227
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12926, nbisL1-mrna-16639, nbisL1-mrna-2137
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.89, evm.TU.utg000010l.353 ... evm.TU.utg000033l.142
Rhizophoraceae	Kandelia obovata	4	Maker00000037, Maker00008459, Maker00008595, Maker00014619
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-1060, nbisL1-mrna-16627, nbisL1-mrna-2368
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14598, nbisL1-mrna-20614, nbisL1-mrna-6257
Salicaceae	Populus euphratica	3	populus_peu05515, populus_peu29257, populus_peu30619
Solanaceae	Lycium barbarum	2	gene-LOC132602871, gene-LOC132631864
Solanaceae	Solanum chilense	1	SOLCI006529100
Solanaceae	Solanum pennellii	2	gene-LOC107015481, gene-LOC107026410
Tamaricaceae	Reaumuria soongarica	2	STRG.18817_chr07_-, gene_4140
Tamaricaceae	Tamarix chinensis	3	TC06G1662, TC12G0417, TC12G0418
Zosteraceae	Zostera marina	3	Zosma01g04350.v3.1, Zosma01g35410.v3.1, Zosma03g12500.v3.1