halophFGD

Basic Information

Locus ID: Ag2G01979

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box protein PP2-A13-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	233317582	233319074	-	Ag2G01979

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.67	32,886.10 Da	33.87	75.79	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14299	Phloem protein 2	124	282	1.6E-36	IPR025886
SUPERFAMILY	SSF81383	F-box domain	17	77	3.6E-8	IPR036047

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61060.1	phloem protein 2-A13.
RefSeq	XP_017250384.1	PREDICTED: F-box protein PP2-A13 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LEX0	F-box protein PP2-A13 OS=Arabidopsis thaliana OX=3702 GN=PP2A13 PE=1 SV=1
TrEMBL	A0A161YF22	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018173 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.101488	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.164536	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.361322	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.148399	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.264098	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.431459	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.066804	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.267424	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.04209	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.763974	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.770461	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.465658	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.923953	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.420386	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	6.176534	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.679102	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.553801	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.033502	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.443463	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.488498	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.476365	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.680476	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.120091	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.071342	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.052055		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.312559		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.200394		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.941675		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.213269		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.058412		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.303028		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.246009		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.208959		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.673603	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.267924	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.620941	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	4.405169	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.241356	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.245863	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.155647	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.4619	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	6.335291	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.997317	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.760217	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.675207	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg10159, jg2325, jg23425, jg26853, jg29657, jg31987, jg37155 ... jg4841, jg7598
Aizoaceae	Mesembryanthemum crystallinum	3	gene_1398, gene_14790, gene_3186
Amaranthaceae	Atriplex hortensis	6	Ah003776, Ah009148, Ah016862, Ah018956, Ah023080, Ah030806
Amaranthaceae	Beta vulgaris	2	BVRB_5g101050, BVRB_7g160710
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg15524, Sbi_jg23708, Sbi_jg27493, Sbi_jg33232 ... Sbi_jg4420, Sbi_jg49335, Sbi_jg7549
Amaranthaceae	Salicornia europaea	4	Seu_jg12488, Seu_jg26792, Seu_jg5849, Seu_jg7946
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000370, GOSA_00001269, GOSA_00005652, GOSA_00005653 ... GOSA_00006579
Amaranthaceae	Suaeda glauca	7	Sgl02042, Sgl07196, Sgl11165, Sgl51901, Sgl57194, Sgl71364 ... Sgl74957
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000001746, gene:ENSEOMG00000006543 ... gene:ENSEOMG00000006656, gene:ENSEOMG00000015627, gene:ENSEOMG00000021200, gene:ENSEOMG00000024442, gene:ENSEOMG00000031125, gene:ENSEOMG00000035630, gene:ENSEOMG00000037714, gene:ENSEOMG00000040134, gene:ENSEOMG00000045808, gene:ENSEOMG00000045846
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0004960, CQ.Regalona.r1.2BG0024250 ... CQ.Regalona.r1.3AG0002380, CQ.Regalona.r1.3BG0002530, CQ.Regalona.r1.5AG0007730, CQ.Regalona.r1.5BG0008500, CQ.Regalona.r1.7AG0019380, CQ.Regalona.r1.7BG0021970
Anacardiaceae	Pistacia vera	4	pistato.v30003790, pistato.v30143640, pistato.v30182320 ... pistato.v30274430
Apiaceae	Apium graveolens	5	Ag10G02006, Ag2G01979, Ag5G01100, Ag6G01805, Ag9G02837
Arecaceae	Cocos nucifera	3	COCNU_08G006340, COCNU_08G006350, COCNU_09G001440
Arecaceae	Phoenix dactylifera	5	gene-LOC103698736, gene-LOC103711142, gene-LOC103715069 ... gene-LOC103720766, gene-LOC120109120
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1777.V1.1, AsparagusV1_04.3065.V1.1 ... AsparagusV1_08.387.V1.1
Asteraceae	Flaveria trinervia	10	Ftri14G03519, Ftri15G10047, Ftri16G00330, Ftri16G26758 ... Ftri2G22584, Ftri3G03509, Ftri5G12000, Ftri6G06780, Ftri6G28424, Ftri7G19720
Brassicaceae	Arabidopsis thaliana	5	AT1G12710.1, AT1G63090.1, AT3G53000.1, AT3G61060.2 ... AT5G52120.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006134m.g.v1.0, Thhalv10008388m.g.v1.0 ... Thhalv10010582m.g.v1.0, Thhalv10014258m.g.v1.0, Thhalv10023623m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g11290.v2.2, Sp2g01500.v2.2, Sp4g18880.v2.2 ... Sp5g02300.v2.2, Sp5g09320.v2.2, SpUn0060_0060.v2.2
Brassicaceae	Brassica nigra	8	BniB02g058540.2N, BniB04g021870.2N, BniB04g027420.2N ... BniB06g062220.2N, BniB08g017450.2N, BniB08g023130.2N, BniB08g023190.2N, BniB08g067390.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G1517, Ceq02G2088, Ceq03G0455, Ceq05G0623
Casuarinaceae	Casuarina glauca	4	Cgl02G1571, Cgl02G2161, Cgl03G0558, Cgl05G0641
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g04280, gene.Cymno10g10580, gene.Cymno12g04330 ... gene.Cymno16g05550
Dunaliellaceae	Dunaliella salina	3	Dusal.0088s00023.v1.0, Dusal.0185s00020.v1.0 ... Dusal.0457s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g05100, gene.Thate02g12160, gene.Thate08g18170
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6124
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1574, evm.TU.LG01.2157, evm.TU.LG04.933 ... evm.TU.LG10.1344
Plantaginaceae	Plantago ovata	3	Pov_00003113, Pov_00004955, Pov_00016748
Plumbaginaceae	Limonium bicolor	6	Lb1G07866, Lb1G07871, Lb2G10769, Lb2G10967, Lb2G14104 ... Lb7G34025
Poaceae	Echinochloa crus-galli	14	AH01.5078, AH03.2669, AH07.2985, AH09.1982, BH01.3499 ... BH01.5215, BH03.2813, BH07.2809, BH09.2143, CH03.3015, CH07.2885, CH09.2287, CH09.281, Contig786.27
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0114270, gene-QOZ80_2AG0140660 ... gene-QOZ80_2BG0168070, gene-QOZ80_2BG0196320, gene-QOZ80_3AG0231090, gene-QOZ80_3BG0296730, gene-QOZ80_4AG0306920, gene-QOZ80_4BG0337940, gene-QOZ80_6AG0528970, gene-QOZ80_6BG0482980
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0051310.1, HORVU.MOREX.r3.2HG0187120.1 ... HORVU.MOREX.r3.4HG0413770.1, HORVU.MOREX.r3.5HG0497800.1, HORVU.MOREX.r3.6HG0603470.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006768, gene-QYE76_007846, gene-QYE76_012177 ... gene-QYE76_024364, gene-QYE76_071371
Poaceae	Oryza coarctata	9	Oco04G018790, Oco05G000980, Oco07G013540, Oco08G013030 ... Oco17G009840, Oco18G001410, Oco18G009860, Oco19G008420, Oco20G008260
Poaceae	Oryza sativa	6	LOC_Os02g13160.1, LOC_Os02g45320.1, LOC_Os03g02550.1 ... LOC_Os04g48270.3, LOC_Os09g35680.1, LOC_Os10g37830.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G308800, gene-BS78_01G506100 ... gene-BS78_02G248100, gene-BS78_04G241200, gene-BS78_06G204800
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0100701, Pt_Chr0100791, Pt_Chr0203708, Pt_Chr0503027 ... Pt_Chr0503034, Pt_Chr0701197
Poaceae	Sporobolus alterniflorus	13	Chr04G006360, Chr06G005210, Chr06G029160, Chr07G005250 ... Chr09G003140, Chr09G023610, Chr10G013680, Chr11G008660, Chr13G021730, Chr15G006790, Chr15G020370, Chr23G006200, Chr25G005130
Poaceae	Thinopyrum elongatum	5	Tel1E01G325600, Tel2E01G690700, Tel4E01G585400 ... Tel5E01G500700, Tel6E01G477200
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG028540, gene_TRIDC1BG032930 ... gene_TRIDC2AG057850, gene_TRIDC2BG060750, gene_TRIDC4BG059550, gene_TRIDC5AG046450, gene_TRIDC5AG074530, gene_TRIDC5BG050250, gene_TRIDC6AG039420, gene_TRIDC6BG046250
Poaceae	Triticum aestivum	15	TraesCS1A02G188700.1, TraesCS1B02G196400.1 ... TraesCS1D02G187700.1, TraesCS2A02G400100.1, TraesCS2B02G418200.2, TraesCS2D02G397700.1, TraesCS4B02G356300.1, TraesCS4D02G350000.1, TraesCS5A02G312700.1, TraesCS5A02G525700.1, TraesCS5B02G313700.1, TraesCS5D02G319500.1, TraesCS6A02G256100.1, TraesCS6B02G269300.1, TraesCS6D02G237300.1
Poaceae	Zea mays	11	Zm00001eb001120_P001, Zm00001eb021380_P001 ... Zm00001eb073610_P001, Zm00001eb187160_P001, Zm00001eb239060_P001, Zm00001eb248010_P001, Zm00001eb266640_P001, Zm00001eb319000_P001, Zm00001eb324910_P001, Zm00001eb413460_P001, Zm00001eb428650_P001
Poaceae	Zoysia japonica	9	nbis-gene-22284, nbis-gene-22601, nbis-gene-34440 ... nbis-gene-35353, nbis-gene-36128, nbis-gene-4732, nbis-gene-49632, nbis-gene-7136, nbis-gene-9172
Poaceae	Zoysia macrostachya	7	Zma_g12787, Zma_g14116, Zma_g15545, Zma_g16863, Zma_g20267 ... Zma_g30050, Zma_g4575
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.2284, evm.TU.LG04.2345, evm.TU.LG04.3436 ... evm.TU.LG10.297, evm.TU.LG11.1595, evm.TU.LG16.151, evm.TU.LG17.1332, evm.TU.LG17.296, evm.TU.LG19.950
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g10480, gene.Posoc06g11780, gene.Posoc09g02650
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1347, evm.TU.Scaffold_2_RagTag.952 ... evm.TU.Scaffold_14_RagTag.233, evm.TU.Scaffold_16_RagTag.221, evm.TU.Scaffold_9_RagTag.397
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18146, nbisL1-mrna-21739, nbisL1-mrna-22465 ... nbisL1-mrna-4256
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15983, nbisL1-mrna-18852, nbisL1-mrna-4189 ... nbisL1-mrna-6252
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10055, nbisL1-mrna-12919, nbisL1-mrna-20288 ... nbisL1-mrna-7110, nbisL1-mrna-8477
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.299, evm.TU.utg000007l.231 ... evm.TU.utg000009l.926, evm.TU.utg000010l.347, evm.TU.utg000022l.358
Rhizophoraceae	Kandelia obovata	5	Maker00004949, Maker00008988, Maker00009767, Maker00014453 ... Maker00018712
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-1055, nbisL1-mrna-12585, nbisL1-mrna-16073 ... nbisL1-mrna-3501, nbisL1-mrna-6886
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10849, nbisL1-mrna-12738, nbisL1-mrna-20620 ... nbisL1-mrna-5788, nbisL1-mrna-6647
Salicaceae	Populus euphratica	7	populus_peu03510, populus_peu11599, populus_peu27784 ... populus_peu29236, populus_peu30597, populus_peu31712, populus_peu34343
Solanaceae	Lycium barbarum	8	gene-LOC132603855, gene-LOC132606968, gene-LOC132607153 ... gene-LOC132609879, gene-LOC132629929, gene-LOC132631843, gene-LOC132634969, gene-LOC132645672
Solanaceae	Solanum chilense	8	SOLCI000086300, SOLCI001285500, SOLCI001683800 ... SOLCI001696900, SOLCI003410900, SOLCI003915500, SOLCI004644500, SOLCI005170800
Solanaceae	Solanum pennellii	8	gene-LOC107001939, gene-LOC107002714, gene-LOC107002822 ... gene-LOC107007554, gene-LOC107013964, gene-LOC107026696, gene-LOC107029526, gene-LOC107032397
Tamaricaceae	Reaumuria soongarica	3	STRG.1049_chr01_+, STRG.24154_chr05_-, STRG.29156_chr11_+
Tamaricaceae	Tamarix chinensis	4	TC00000030, TC01G4527, TC03G2486, TC09G2162
Zosteraceae	Zostera marina	4	Zosma01g07570.v3.1, Zosma01g35950.v3.1, Zosma05g33430.v3.1 ... Zosma06g12000.v3.1