halophFGD

Basic Information

Locus ID: Ag2G01960

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: zinc finger CCCH domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	231868326	231874458	-	Ag2G01960

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.30	47,266.72 Da	32.85	70.14	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	111	131	1.4E-6	IPR000571
Pfam	PF00400	WD domain, G-beta repeat	263	296	0.034	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	139	175	4.8E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	301	335	8.5E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	133	426	8.24E-45	IPR036322
SUPERFAMILY	SSF90229	CCCH zinc finger	107	131	3.53E-6	IPR036855
Gene3D	G3DSA:3.30.1370.210	-	7	66	2.6E-5	-
Gene3D	G3DSA:2.130.10.10	-	139	194	1.3E-6	IPR015943
Gene3D	G3DSA:2.30.30.1190	-	84	138	2.7E-5	-
Gene3D	G3DSA:2.130.10.10	-	228	431	6.7E-33	IPR015943
SMART	SM00320	WD40_4	340	383	6.4	IPR001680
SMART	SM00320	WD40_4	136	175	8.2E-6	IPR001680
SMART	SM00320	WD40_4	299	336	4.2E-4	IPR001680
SMART	SM00320	WD40_4	215	252	16.0	IPR001680
SMART	SM00320	WD40_4	259	296	0.0039	IPR001680
SMART	SM00356	c3hfinal6	108	132	1.6E-5	IPR000571
SMART	SM00320	WD40_4	386	423	1.7	IPR001680
SMART	SM00356	c3hfinal6	24	48	0.4	IPR000571
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	111	133	13.957461	IPR000571
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	266	305	11.845179	IPR001680
ProSiteProfiles	PS50103	Zinc finger C3H1-type profile.	23	49	9.80748	IPR000571
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	266	299	9.019239	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	143	184	13.649761	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	143	175	10.891048	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	162	176	2.4E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	323	337	2.4E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	283	297	2.4E-6	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10260 (F-box and WD-40 domain protein 7)

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25440.1	zinc finger WD40 repeat protein 1.
RefSeq	XP_017253001.1	PREDICTED: zinc finger CCCH domain-containing protein 63 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNZ2	Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1
TrEMBL	A0A161YMJ3	C3H1-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018151 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.912208	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.862689	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.229625	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.195817	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.292936	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.805027	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.877854	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.947536	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	10.249062	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	11.410779	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	10.223078	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.588742	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.776097	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.854342	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.083417	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.99124	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.928369	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.561688	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.759003	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.966689	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.356863	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.172439	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.020857	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.703589	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.637172	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.590726	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	5.352058	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.300033	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.506387	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.245698		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.051471		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.147949		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.471551		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.107791		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.842075		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.254875		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.265822		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.588823		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.568288	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.375312	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.437436	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.113294	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.781324	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	9.392723	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	9.634288	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.238226	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.499217	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.980287	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.476828	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.697561	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10154, jg14043, jg2340, jg29301
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1388, gene_3174
Amaranthaceae	Atriplex hortensis	2	Ah018984, Ah031355
Amaranthaceae	Beta vulgaris	2	BVRB_8g191380, BVRB_8g191390
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15485, Sbi_jg56296
Amaranthaceae	Salicornia europaea	1	Seu_jg26761
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006608, GOSA_00008943
Amaranthaceae	Suaeda glauca	4	Sgl02069, Sgl07222, Sgl74130, Sgl77645
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000705, gene:ENSEOMG00000004802 ... gene:ENSEOMG00000028815, gene:ENSEOMG00000040014, gene:ENSEOMG00000046367
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0002180, CQ.Regalona.r1.3BG0002300 ... CQ.Regalona.r1.7AG0021940, CQ.Regalona.r1.7BG0024510
Anacardiaceae	Pistacia vera	2	pistato.v30003610, pistato.v30182120
Apiaceae	Apium graveolens	4	Ag10G00202, Ag2G01960, Ag4G01742, Ag8G00755
Arecaceae	Cocos nucifera	2	COCNU_07G007240, scaffold000778G000030
Arecaceae	Phoenix dactylifera	1	gene-LOC103711123
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3628.V1.1, AsparagusV1_04.2108.V1.1 ... AsparagusV1_04.2986.V1.1, AsparagusV1_04.2990.V1.1, AsparagusV1_08.2958.V1.1, AsparagusV1_09.778.V1.1, AsparagusV1_10.997.V1.1, AsparagusV1_10.998.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G31744, Ftri8G33145, Ftri9G00006, FtriNA05352
Brassicaceae	Arabidopsis thaliana	4	AT4G25440.1, AT5G40880.1, AT5G49200.1, AT5G51980.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10013582m.g.v1.0, Thhalv10025269m.g.v1.0 ... Thhalv10027743m.g.v1.0, Thhalv10027745m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g14230.v2.2, Sp7g01600.v2.2, Sp7g23490.v2.2
Brassicaceae	Brassica nigra	8	BniB01g026530.2N, BniB01g026590.2N, BniB02g029520.2N ... BniB02g029960.2N, BniB03g040680.2N, BniB03g053290.2N, BniB05g011810.2N, BniB08g017560.2N
Casuarinaceae	Casuarina equisetifolia	16	Ceq01G1037, Ceq01G1048, Ceq01G1534, Ceq02G1793, Ceq02G2070 ... Ceq04G1031, Ceq04G1039, Ceq04G1042, Ceq04G1051, Ceq05G2127, Ceq08G1499, Ceq08G1617, Ceq08G1639, Ceq08G1643, Ceq08G1752, Ceq09G1260
Casuarinaceae	Casuarina glauca	21	Cgl01G1150, Cgl01G1209, Cgl01G1220, Cgl01G1699, Cgl02G1853 ... Cgl02G1865, Cgl02G2141, Cgl04G1117, Cgl04G1171, Cgl04G1180, Cgl05G2188, Cgl05G2190, Cgl05G2209, Cgl08G1478, Cgl08G1531, Cgl08G1656, Cgl08G1680, Cgl08G1683, Cgl08G1690, Cgl08G1788, Cgl09G1348
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno14g01870, gene.Cymno14g01880
Dunaliellaceae	Dunaliella salina	1	Dusal.0698s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g11440, gene.Thate08g03670, gene.Thate08g03720
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2214, evm.TU.LG04.955, evm.TU.LG04.961 ... evm.TU.LG04.963, evm.TU.LG04.964
Plantaginaceae	Plantago ovata	5	Pov_00019507, Pov_00028600, Pov_00028769, Pov_00035026 ... Pov_00040895
Plumbaginaceae	Limonium bicolor	2	Lb1G04398, Lb1G04431
Poaceae	Echinochloa crus-galli	9	AH01.5287, AH02.353, AH05.3464, AH07.2993, BH02.379 ... BH07.2816, CH01.5523, CH02.418, CH07.2896
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1BG0061370, gene-QOZ80_1BG0061390 ... gene-QOZ80_2AG0140780, gene-QOZ80_2BG0196390
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0236950.1, HORVU.MOREX.r3.6HG0603760.2 ... HORVU.MOREX.r3.4HG0407530.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_000717, gene-QYE76_008723, gene-QYE76_024346 ... gene-QYE76_048188, gene-QYE76_050198, gene-QYE76_050733, gene-QYE76_068993, gene-QYE76_070820
Poaceae	Oryza coarctata	6	Oco01G003770, Oco02G003840, Oco03G018100, Oco04G018850 ... Oco05G002780, Oco06G002760
Poaceae	Oryza sativa	5	LOC_Os01g09252.1, LOC_Os02g45480.1, LOC_Os03g05210.1 ... LOC_Os03g05250.1, LOC_Os04g48375.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G034600, gene-BS78_04G240500
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100064, Pt_Chr0100084, Pt_Chr0200021, Pt_Chr0203712 ... Pt_Chr0206594, Pt_Chr0403282, Pt_Chr0405571, Pt_Chr0603331, Pt_Chr0700307
Poaceae	Sporobolus alterniflorus	7	Chr02G020610, Chr03G006120, Chr03G006130, Chr03G006140 ... Chr06G005140, Chr09G023570, Chr15G006720
Poaceae	Thinopyrum elongatum	3	Tel3E01G189800, Tel4E01G515900, Tel6E01G478600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG013470, gene_TRIDC3BG018020 ... gene_TRIDC4AG055630, gene_TRIDC4BG052810, gene_TRIDC6AG039630, gene_TRIDC6BG046540
Poaceae	Triticum aestivum	8	TraesCS3A02G109600.1, TraesCS3D02G111400.1 ... TraesCS4A02G410400.1.cds1, TraesCS4B02G310500.1.cds1, TraesCS4D02G308400.1.cds1, TraesCS6A02G257200.1, TraesCS6B02G267900.1, TraesCS6D02G238400.3
Poaceae	Zea mays	3	Zm00001eb088450_P001, Zm00001eb121510_P001 ... Zm00001eb250580_P003
Poaceae	Zoysia japonica	5	nbis-gene-22274, nbis-gene-36001, nbis-gene-6562 ... nbis-gene-6565, nbis-gene-9161
Poaceae	Zoysia macrostachya	4	Zma_g10203, Zma_g10204, Zma_g14121, Zma_g16871
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.578, evm.TU.LG10.1251, evm.TU.LG11.1581 ... evm.TU.LG12.1152, evm.TU.LG19.1212, evm.TU.LG24.1214, evm.TU.LG25.760, evm.TU.LG26.856
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g07270
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.1326, evm.TU.Scaffold_4_RagTag.173 ... evm.TU.Scaffold_14_RagTag.542, evm.TU.Scaffold_1_RagTag.1170, evm.TU.Scaffold_2_RagTag.1165
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12632, nbisL1-mrna-17811, nbisL1-mrna-29176 ... nbisL1-mrna-6450
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12959, nbisL1-mrna-16215, nbisL1-mrna-1726 ... nbisL1-mrna-6824
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-18829, nbisL1-mrna-2117, nbisL1-mrna-8204 ... nbisL1-mrna-8206
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000007l.38, add.evm.TU.utg000010l.145 ... evm.TU.utg000008l.104, evm.TU.utg000016l.804
Rhizophoraceae	Kandelia obovata	3	Maker00000881, Maker00009084, Maker00017327
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-1044, nbisL1-mrna-10988, nbisL1-mrna-12431 ... nbisL1-mrna-23325, nbisL1-mrna-23326, nbisL1-mrna-2383
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10569, nbisL1-mrna-13369, nbisL1-mrna-20635 ... nbisL1-mrna-5561, nbisL1-mrna-6234
Salicaceae	Populus euphratica	4	populus_peu27762, populus_peu29225, populus_peu30584 ... populus_peu34079
Solanaceae	Lycium barbarum	1	gene-LOC132631818
Solanaceae	Solanum pennellii	1	gene-LOC107015414
Tamaricaceae	Reaumuria soongarica	3	gene_15775, gene_15850, gene_5194
Tamaricaceae	Tamarix chinensis	5	TC06G1729, TC09G2144, TC09G2145, TC09G2148, TC09G2149
Zosteraceae	Zostera marina	1	Zosma03g26430.v3.1