Basic Information
Locus ID:
Ag2G01946
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 231322335 | 231324936 | - | Ag2G01946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 71,114.99 Da | 50.71 | 81.13 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 86 | 244 | 3.0E-26 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 60 | 613 | 1.5E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 159 | 258 | 2.3E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 603 | 2.1E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 54 | 157 | 1.0E-21 | - |
| SMART | SM00220 | serkin_6 | 82 | 605 | 2.3E-13 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 82 | 606 | 25.983252 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 204 | 216 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 88 | 109 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25390.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017249353.1 | PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Daucus carota subsp. sativus] | 0 |
| Q9STJ8 | Receptor-like serine/threonine-protein kinase At4g25390 OS=Arabidopsis thaliana OX=3702 GN=At4g25390 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164YRT5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018137 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.940071 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 36.680706 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.493584 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 38.154766 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 38.196369 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 31.693331 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.921591 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.491743 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.072869 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.241001 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.420062 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.471337 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.370947 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.192395 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.092474 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.498672 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.556808 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.197155 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.799909 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.301819 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.611502 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.250258 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.412024 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.98689 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.876544 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.623719 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.931668 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.785447 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.990792 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.234837 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.459046 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.510734 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 14.777502 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.671423 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.626865 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.477571 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.031569 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.844842 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.341504 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.863013 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.181011 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.163181 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.595926 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.931025 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.874715 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.432581 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.570738 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.15661 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.878112 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.545653 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14060, jg1856, jg2361, jg29282, jg29283 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16074, gene_23254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019022 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg15437, Sbi_jg4374, Sbi_jg49449, Sbi_jg56238 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26713, Seu_jg5791 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000330, GOSA_00003587 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02097, Sgl07251, Sgl11225, Sgl16620 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013138, gene:ENSEOMG00000032517 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0005910, CQ.Regalona.r1.2BG0023820 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30003320, pistato.v30181860 |
| Apiaceae | Apium graveolens | 3 | Ag2G01946, Ag4G01755, Ag6G01643 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G008820, COCNU_10G006830 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702803, gene-LOC103708198, gene-LOC120105910 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2220.V1.1, AsparagusV1_06.829.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G16705, Ftri6G17759 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G45590.1, AT4G25390.1, AT5G51770.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001343m.g.v1.0, Thhalv10015950m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g27640.v2.2, Sp6g13990.v2.2, Sp7g23410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g001390.2N, BniB02g081810.2N, BniB08g017630.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0459, Ceq02G2049 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0488, Cgl02G2117 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g07530 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g24720, gene.Thate08g06080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6114, nbisL1-mrna-9484 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2244, evm.TU.LG04.220 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00032212, Pov_00040870 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G01158, Lb1G03176, Lb1G04377, Lb1G07883, Lb3G18826 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0241290, gene-QOZ80_3BG0286800 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0391450.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_036650, gene-QYE76_069280 |
| Poaceae | Oryza coarctata | 4 | Oco05G008330, Oco06G008610, Oco19G001550, Oco20G001760 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g14710.1, LOC_Os10g10870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G416400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102064, Pt_Chr0102085, Pt_Chr0401564 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G029650, Chr0G013690, Chr0G033230, Chr12G009880 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G386800, Tel7E01G881700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG067930, gene_TRIDC2BG018310 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G081400.1.cds1, TraesCS4B02G222400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb010820_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2241, nbis-gene-42969 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13080, Zma_g1631 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1344, evm.TU.LG11.1567, evm.TU.LG14.635 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g18130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1306, evm.TU.Scaffold_4_RagTag.188 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12614 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2735, nbisL1-mrna-4195 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12882 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.42, add.evm.TU.utg000010l.135 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000084, Maker00008568 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17139, nbisL1-mrna-17660 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20652, nbisL1-mrna-6220 |
| Salicaceae | Populus euphratica | 5 | populus_peu27814, populus_peu29197, populus_peu30553 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631797, gene-LOC132645625 |
| Solanaceae | Solanum chilense | 2 | SOLCI000199700, SOLCI007133000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008565, gene-LOC107012571 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29220_chr11_-, STRG.6327_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2711, TC06G1825 |
| Zosteraceae | Zostera marina | 1 | Zosma01g03020.v3.1 |