Basic Information
Locus ID:
Ag2G01944
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 231040944 | 231044528 | + | Ag2G01944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 110,250.75 Da | 49.33 | 71.64 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00180 | PKc | 849 | 983 | 4.24413E-13 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 849 | 982 | 4.6E-15 | IPR011009 |
| Gene3D | G3DSA:1.10.10.60 | - | 202 | 274 | 1.3E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 844 | 988 | 7.3E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51800.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017252067.1 | PREDICTED: uncharacterized protein LOC108222696 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164YRS2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.128779 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.147775 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.094113 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.152348 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.364227 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.245631 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.420016 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.020064 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.911255 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.2001 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.882132 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.304175 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.42437 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.072781 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.033277 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.091822 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.110183 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.062701 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.164911 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.228849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.110231 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.164385 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.030221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.077624 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.049395 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.402458 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.13633 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.422498 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.167011 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.704848 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.200676 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.100287 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.129856 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.880151 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.287586 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.146553 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.030545 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.037362 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16080 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019014 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170120 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006632 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02092, Sgl07246 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000043240 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0001950, CQ.Regalona.r1.3BG0002040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30181910 |
| Apiaceae | Apium graveolens | 1 | Ag2G01944 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10036 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015853m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g14050.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g029180.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2122 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2239 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04370, Lb1G04382 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1341, evm.TU.LG14.630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.184, evm.TU.Scaffold_4_RagTag.185 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29165 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6829 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2108 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.111 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000204 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17658 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6224 |
| Salicaceae | Populus euphratica | 1 | populus_peu30558 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631800 |
| Solanaceae | Solanum chilense | 1 | SOLCI005717800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013051 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5187 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1793 |