halophFGD

Basic Information

Locus ID: Ag2G01938

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	230425804	230432490	-	Ag2G01938

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.47	96,072.87 Da	36.76	103.06	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	428	487	3.8E-9	IPR001611
Pfam	PF00069	Protein kinase domain	650	740	1.1E-9	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	22	62	1.4E-8	IPR013210
Pfam	PF13516	Leucine Rich repeat	234	251	0.49	IPR001611
Pfam	PF13855	Leucine rich repeat	140	200	3.7E-8	IPR001611
SUPERFAMILY	SSF52058	L domain-like	305	561	4.25E-61	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	636	811	3.93E-20	IPR011009
SUPERFAMILY	SSF52058	L domain-like	20	319	4.59E-65	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	609	722	9.7E-21	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	723	814	3.1E-5	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	189	261	2.8E-19	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	262	571	1.1E-96	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	22	188	1.6E-50	IPR032675
SMART	SM00369	LRR_typ_2	91	115	27.0	IPR003591
SMART	SM00369	LRR_typ_2	498	522	140.0	IPR003591
SMART	SM00369	LRR_typ_2	426	449	91.0	IPR003591
SMART	SM00369	LRR_typ_2	139	162	280.0	IPR003591
SMART	SM00219	tyrkin_6	647	806	3.8E-4	IPR020635
SMART	SM00369	LRR_typ_2	354	378	120.0	IPR003591
SMART	SM00369	LRR_typ_2	450	473	85.0	IPR003591
SMART	SM00369	LRR_typ_2	163	187	16.0	IPR003591
SMART	SM00369	LRR_typ_2	282	306	100.0	IPR003591
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	165	187	7.257614	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	647	869	8.753906	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	653	675	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K20718 (LRR receptor-like serine/threonine-protein kinase ERECTA [EC:2.7.11.1])

Pathway:

ko04016 (MAPK signaling pathway - plant) map04016 (MAPK signaling pathway - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G07180.2	-
RefSeq	XP_017249344.1	PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGW6	LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana OX=3702 GN=ERL1 PE=1 SV=1
TrEMBL	A0A164YRK9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018130 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.941737	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.854329	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.179943	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.940608	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.123445	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.12735	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.480785	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.591027	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	35.19276	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	37.795124	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	39.889019	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	37.946918	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	35.584068	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	28.337496	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.705485	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.180062	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.137864	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.205683	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.034216	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.029552	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.287808	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.099649	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.171762	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.246193	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.260534	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.530119	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.241376	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.12055		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.605972		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.187504		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.876675		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.011055	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.405968	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.173845	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.095463	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	19.261187	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.037932	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.406143	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14068, jg23990, jg4602, jg7950, jg7951
Aizoaceae	Mesembryanthemum crystallinum	1	gene_8054
Amaranthaceae	Atriplex hortensis	1	Ah034440
Amaranthaceae	Beta vulgaris	1	BVRB_2g033750
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20415, Sbi_jg23364
Amaranthaceae	Salicornia europaea	1	Seu_jg17147
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00009075
Amaranthaceae	Suaeda glauca	2	Sgl63595, Sgl68082
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016861, gene:ENSEOMG00000022156 ... gene:ENSEOMG00000051047
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0013550, CQ.Regalona.r1.2BG0015610
Anacardiaceae	Pistacia vera	2	pistato.v30181640, pistato.v30260850
Apiaceae	Apium graveolens	4	Ag2G01558, Ag2G01938, Ag7G00418, Ag9G02574
Arecaceae	Cocos nucifera	2	COCNU_03G004100, COCNU_08G006160
Arecaceae	Phoenix dactylifera	2	gene-LOC103704912, gene-LOC103721746
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1302.V1.1, AsparagusV1_03.1303.V1.1 ... AsparagusV1_Unassigned.264.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G21699, Ftri1G09595, Ftri3G24629
Brassicaceae	Arabidopsis thaliana	3	AT2G26330.1, AT5G07180.1, AT5G62230.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001898m.g.v1.0, Thhalv10003615m.g.v1.0 ... Thhalv10012600m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g25430.v2.2, Sp4g06960.v2.2, Sp6g35720.v2.2
Brassicaceae	Brassica nigra	3	BniB02g024810.2N, BniB02g053710.2N, BniB06g010510.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2029, Ceq03G2152
Casuarinaceae	Casuarina glauca	2	Cgl02G2101, Cgl03G2294
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g01110, gene.Cymno18g04630
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g05590, gene.Thate05g25620
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2262, evm.TU.LG07.694
Plantaginaceae	Plantago ovata	2	Pov_00013390, Pov_00040854
Plumbaginaceae	Limonium bicolor	4	Lb1G04460, Lb1G07869, Lb2G12716, Lb4G25723
Poaceae	Echinochloa crus-galli	9	AH06.497, AH06.682, AH07.3673, BH06.187, BH06.756, BH07.3483 ... CH06.177, CH06.785, CH07.3556
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0147880, gene-QOZ80_2BG0203290 ... gene-QOZ80_6AG0507270, gene-QOZ80_6AG0512770, gene-QOZ80_6BG0459290, gene-QOZ80_6BG0464660
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.6HG0620170.1, HORVU.MOREX.r3.7HG0644570.1 ... HORVU.MOREX.r3.7HG0662630.1
Poaceae	Lolium multiflorum	3	gene-QYE76_025829, gene-QYE76_027423, gene-QYE76_027630
Poaceae	Oryza coarctata	6	Oco03G023250, Oco04G023830, Oco11G001430, Oco11G004670 ... Oco12G001340, Oco12G004710
Poaceae	Oryza sativa	3	LOC_Os02g53720.1, LOC_Os06g03970.1, LOC_Os06g10230.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G295600, gene-BS78_10G022700 ... gene-BS78_10G079400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0203053, Pt_Chr0304993, Pt_Chr0405065, Pt_Ctg00141
Poaceae	Sporobolus alterniflorus	5	Chr06G000840, Chr11G020700, Chr11G023880, Chr15G002120 ... Chr21G002680
Poaceae	Thinopyrum elongatum	3	Tel6E01G593400, Tel7E01G139500, Tel7E01G326500
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG062720, gene_TRIDC6AG050310 ... gene_TRIDC6BG058860, gene_TRIDC7AG007100, gene_TRIDC7AG020400, gene_TRIDC7BG010400
Poaceae	Triticum aestivum	9	TraesCS4A02G422700.1, TraesCS6A02G336300.1 ... TraesCS6B02G366900.1, TraesCS6D02G316000.1, TraesCS7A02G066200.1, TraesCS7A02G164000.1, TraesCS7B02G069800.2, TraesCS7D02G060400.1, TraesCS7D02G166100.1
Poaceae	Zea mays	3	Zm00001eb256740_P004, Zm00001eb278640_P001 ... Zm00001eb378340_P001
Poaceae	Zoysia japonica	6	nbis-gene-34988, nbis-gene-40011, nbis-gene-40299 ... nbis-gene-4900, nbis-gene-51154, nbis-gene-57279
Poaceae	Zoysia macrostachya	5	Zma_g17273, Zma_g29034, Zma_g29298, Zma_g31281, Zma_g31537
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.846, evm.TU.LG15.88
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g02910, gene.Posoc08g04520
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.654, evm.TU.Scaffold_4_RagTag.1093 ... evm.TU.Scaffold_11_RagTag.1296
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12606, nbisL1-mrna-25861
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15597, nbisL1-mrna-18568, nbisL1-mrna-7054
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12871, nbisL1-mrna-12872, nbisL1-mrna-1338 ... nbisL1-mrna-8908
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.700, evm.TU.utg000010l.326 ... evm.TU.utg000033l.466
Rhizophoraceae	Kandelia obovata	3	Maker00000131, Maker00008771, Maker00015066
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-18292, nbisL1-mrna-2052, nbisL1-mrna-540
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-8056, nbisL1-mrna-8944, nbisL1-mrna-9406
Salicaceae	Populus euphratica	5	populus_peu04947, populus_peu04948, populus_peu29180 ... populus_peu29181, populus_peu30537
Solanaceae	Lycium barbarum	2	gene-LOC132631775, gene-LOC132635992
Solanaceae	Solanum chilense	2	SOLCI004318000, SOLCI006698600
Solanaceae	Solanum pennellii	2	gene-LOC107014834, gene-LOC107028570
Tamaricaceae	Reaumuria soongarica	2	gene_13363, gene_5183
Tamaricaceae	Tamarix chinensis	2	TC06G1946, TC11G1493
Zosteraceae	Zostera marina	4	Zosma01g09160.v3.1, Zosma02g09020.v3.1, Zosma03g25670.v3.1 ... Zosma06g03280.v3.1