halophFGD

Basic Information

Locus ID: Ag2G01928

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	229422496	229426572	-	Ag2G01928

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.36	110,796.73 Da	35.68	100.59	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00560	Leucine Rich Repeat	283	303	0.34	IPR001611
Pfam	PF13855	Leucine rich repeat	498	557	1.2E-6	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	25	63	3.6E-9	IPR013210
Pfam	PF00069	Protein kinase domain	702	922	6.1E-46	IPR000719
Pfam	PF13855	Leucine rich repeat	68	125	1.2E-7	IPR001611
SUPERFAMILY	SSF52047	RNI-like	70	391	1.33E-62	-
SUPERFAMILY	SSF52058	L domain-like	303	596	2.13E-48	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	702	974	7.15E-72	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	276	343	3.7E-12	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	25	172	4.0E-42	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	693	777	1.2E-19	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	344	618	7.6E-73	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	778	986	2.0E-57	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	173	275	3.1E-31	IPR032675
SMART	SM00369	LRR_typ_2	329	352	63.0	IPR003591
SMART	SM00369	LRR_typ_2	89	113	0.98	IPR003591
SMART	SM00369	LRR_typ_2	544	567	120.0	IPR003591
SMART	SM00369	LRR_typ_2	281	304	5.1	IPR003591
SMART	SM00369	LRR_typ_2	185	209	280.0	IPR003591
SMART	SM00220	serkin_6	699	974	3.3E-32	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	699	975	37.601398	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	283	305	7.480934	IPR001611
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	705	728	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	825	837	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G61480.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017253357.1	PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Daucus carota subsp. sativus]
Swiss-Prot	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1
TrEMBL	A0A164YR87	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018116 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.29441	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.403416	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.61131	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.746727	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.823098	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.312517	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.223397	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.204661	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	46.624748	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	45.036545	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	50.785015	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	36.922878	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	32.713833	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	30.361097	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.443769	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.900446	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.744499	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.859514	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.975886	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.405401	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.093907	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	124.312645	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	112.813347	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	70.001175	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	71.573959	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	52.275501	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	30.492561	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	38.862141	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	66.285675	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.534674		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.15947		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.363078		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.838837		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.753596		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.261941		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.203322		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.286667		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.181783		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.048079	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.095876	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.368682	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.295424	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.280059	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.564628	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.945669	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.980947	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.690605	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.558241	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10118, jg10119, jg14119, jg14618, jg2424, jg2714, jg35458 ... jg37794
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10348, gene_3113, gene_6429
Amaranthaceae	Atriplex hortensis	3	Ah005597, Ah018200, Ah029164
Amaranthaceae	Beta vulgaris	2	BVRB_4g077400, BVRB_4g077420
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15318, Sbi_jg17302, Sbi_jg56136, Sbi_jg61939
Amaranthaceae	Salicornia europaea	2	Seu_jg26614, Seu_jg559
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015468, GOSA_00020229, GOSA_00022870
Amaranthaceae	Suaeda glauca	6	Sgl02194, Sgl07351, Sgl24365, Sgl29541, Sgl74278, Sgl77843
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004998, gene:ENSEOMG00000009649 ... gene:ENSEOMG00000010788, gene:ENSEOMG00000028873, gene:ENSEOMG00000031986, gene:ENSEOMG00000036881, gene:ENSEOMG00000038436, gene:ENSEOMG00000040889, gene:ENSEOMG00000045823
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0008940, CQ.Regalona.r1.3BG0009600 ... CQ.Regalona.r1.4AG0006780, CQ.Regalona.r1.4BG0006900, CQ.Regalona.r1.7AG0011530, CQ.Regalona.r1.7BG0013690
Anacardiaceae	Pistacia vera	3	pistato.v30015380, pistato.v30090820, pistato.v30180680
Apiaceae	Apium graveolens	4	Ag10G00850, Ag2G01282, Ag2G01928, Ag9G01334
Arecaceae	Cocos nucifera	4	COCNU_07G009320, COCNU_08G007150, COCNU_09G002230 ... COCNU_09G009070
Arecaceae	Phoenix dactylifera	5	gene-LOC103699355, gene-LOC103711908, gene-LOC103717391 ... gene-LOC103720511, gene-LOC120105738
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1702.V1.1, AsparagusV1_04.288.V1.1 ... AsparagusV1_07.1936.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G11147, Ftri17G11296, Ftri4G30777
Brassicaceae	Arabidopsis thaliana	3	AT1G08590.1, AT4G28650.1, AT5G61480.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003570m.g.v1.0, Thhalv10006658m.g.v1.0 ... Thhalv10024302m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g07250.v2.2, Sp2g24680.v2.2, Sp7g26620.v2.2
Brassicaceae	Brassica nigra	3	BniB02g075780.2N, BniB03g002800.2N, BniB05g008910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1260, Ceq06G2410, Ceq08G0222
Casuarinaceae	Casuarina glauca	2	Cgl06G1320, Cgl08G0174
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g06670, gene.Cymno18g03800
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate08g00720, gene.Thate08g24000, gene.Thate09g02880
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6370
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2363, evm.TU.LG03.2175, evm.TU.LG04.1368
Plantaginaceae	Plantago ovata	4	Pov_00012395, Pov_00015187, Pov_00024569, Pov_00040414
Plumbaginaceae	Limonium bicolor	1	Lb1G06459
Poaceae	Echinochloa crus-galli	6	AH01.5283, AH07.130, BH01.4927, BH07.74, CH01.5530 ... CH03.4751
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0099020, gene-QOZ80_2BG0152500 ... gene-QOZ80_3AG0233520, gene-QOZ80_3BG0294420, gene-QOZ80_8AG0617140, gene-QOZ80_8BG0644700
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0407340.1.CDS1 ... HORVU.MOREX.r3.6HG0543250.1.CDS1, HORVU.MOREX.r3.7HG0701280.1
Poaceae	Lolium multiflorum	4	gene-QYE76_019466, gene-QYE76_019467, gene-QYE76_032474 ... gene-QYE76_070831
Poaceae	Oryza coarctata	6	Oco03G000590, Oco04G000550, Oco05G002730, Oco06G002710 ... Oco15G001950, Oco16G002020
Poaceae	Oryza sativa	3	LOC_Os02g02140.1, LOC_Os03g05140.1, LOC_Os08g05290.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G483200, gene-BS78_04G008900 ... gene-BS78_07G041300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0100092, Pt_Chr0100198, Pt_Chr0100206, Pt_Chr0200919 ... Pt_Chr0402870, Pt_Chr0405582
Poaceae	Sporobolus alterniflorus	8	Chr01G037400, Chr04G004610, Chr06G035970, Chr07G006930 ... Chr0G010260, Chr15G027140, Chr20G010640, Chr29G011720
Poaceae	Thinopyrum elongatum	3	Tel4E01G514300, Tel6E01G082400, Tel7E01G523700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG055770, gene_TRIDC4BG052660 ... gene_TRIDC6AG003630, gene_TRIDC6BG005190, gene_TRIDC7AG042650, gene_TRIDC7BG033810
Poaceae	Triticum aestivum	9	TraesCS4A02G409400.1.cds1, TraesCS4B02G309300.1.cds1 ... TraesCS4D02G307500.1.cds1, TraesCS6A02G029100.1.cds1, TraesCS6B02G042000.1.cds1, TraesCS6D02G033300.1.cds1, TraesCS7A02G305700.1, TraesCS7B02G205900.1, TraesCS7D02G302400.1
Poaceae	Zea mays	4	Zm00001eb003660_P001, Zm00001eb172920_P001 ... Zm00001eb229700_P001, Zm00001eb402940_P001
Poaceae	Zoysia japonica	2	nbis-gene-41556, nbis-gene-4523
Poaceae	Zoysia macrostachya	5	Zma_g12054, Zma_g14824, Zma_g2083, Zma_g23604, Zma_g4433
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.941, evm.TU.LG08.792, evm.TU.LG11.1498 ... evm.TU.LG12.799, evm.TU.LG22.1133
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g15720, gene.Posoc07g04720
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1258, evm.TU.Scaffold_1_RagTag.333 ... evm.TU.Scaffold_4_RagTag.221, evm.TU.Scaffold_9_RagTag.1056
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12450, nbisL1-mrna-12559, nbisL1-mrna-21129 ... nbisL1-mrna-29131, nbisL1-mrna-7900
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10065, nbisL1-mrna-18608, nbisL1-mrna-8970 ... nbisL1-mrna-9006
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12826, nbisL1-mrna-2075, nbisL1-mrna-5380 ... nbisL1-mrna-7279
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000003l.144, add.evm.TU.utg000010l.115 ... add.evm.TU.utg000012l.83, evm.TU.utg000008l.136
Rhizophoraceae	Kandelia obovata	4	Maker00001364, Maker00008876, Maker00009420, Maker00011041
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-1413, nbisL1-mrna-2412, nbisL1-mrna-569 ... nbisL1-mrna-7742
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-21516, nbisL1-mrna-301, nbisL1-mrna-4999 ... nbisL1-mrna-6193, nbisL1-mrna-8892
Salicaceae	Populus euphratica	5	populus_peu03345, populus_peu16000, populus_peu19500 ... populus_peu30766, populus_peu34191
Solanaceae	Lycium barbarum	5	gene-LOC132610387, gene-LOC132615614, gene-LOC132631700 ... gene-LOC132632468, gene-LOC132640476
Solanaceae	Solanum chilense	4	SOLCI004265800, SOLCI005301700, SOLCI005499800 ... SOLCI007350200
Solanaceae	Solanum pennellii	4	gene-LOC107015273, gene-LOC107015818, gene-LOC107018827 ... gene-LOC114073832
Tamaricaceae	Reaumuria soongarica	3	gene_12967, gene_4296, gene_7147
Tamaricaceae	Tamarix chinensis	3	TC01G0550, TC05G0198, TC05G2260
Zosteraceae	Zostera marina	1	Zosma04g25890.v3.1