Basic Information
Locus ID:
Ag2G01926
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 229415612 | 229417374 | - | Ag2G01926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 49,860.81 Da | 38.09 | 108.18 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 159 | 405 | 3.18E-26 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 70 | 121 | 8.9E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 133 | 420 | 6.3E-26 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 68 | 105 | 1.4E-6 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51380.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017249518.1 | PREDICTED: F-box protein At5g51370-like [Daucus carota subsp. sativus] | 0 |
| Q9FGN3 | F-box protein At5g51380 OS=Arabidopsis thaliana OX=3702 GN=At5g51380 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2R6PLX3 | F-box protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc27941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.166722 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.101892 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.142039 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.337247 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.011535 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.586009 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.951047 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.813643 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.98246 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.576179 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.057449 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.034567 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.342725 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.687145 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.851246 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.831323 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.882945 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.059704 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.084051 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.681818 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.206779 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.260549 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.834306 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.790621 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.116523 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.227144 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.071927 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.982176 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.241206 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.042833 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.059964 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.197057 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.048741 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.447134 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.811335 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.933621 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.297346 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14116, jg1797, jg26799, jg34039 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1322, gene_6065 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023257 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29228, Sbi_jg3467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6499 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000221 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11350, Sgl16735 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012938, gene:ENSEOMG00000034537 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006870, CQ.Regalona.r1.2BG0022810 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30002370, pistato.v30110810, pistato.v30180640 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G00294, Ag10G02685, Ag2G01926 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005700, COCNU_07G005710 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711681, gene-LOC113463022 |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G23006, Ftri18G34030, Ftri3G27578, Ftri9G05825 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT5G07670.1, AT5G51370.2, AT5G51380.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013410m.g.v1.0, Thhalv10013413m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g13550.v2.2, Sp6g35230.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g028740.2N, BniB02g053320.2N, BniB05g028270.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1116, Ceq08G0218 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1135, Cgl08G0170 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g02410, gene.Cymno18g03980 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6088 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2368, evm.TU.LG04.132 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00032260, Pov_00040781 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02142, Lb1G02162 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.2878, CH07.2766 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0139820, gene-QOZ80_2BG0195480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0601060.2 |
| Poaceae | Oryza coarctata | 1 | Oco04G018010 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44104.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G219200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203940, Pt_Chr0204009 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G005810, Chr09G024260, Chr10G004730, Chr17G013760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G467800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG038470, gene_TRIDC6BG045370 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G249800.1, TraesCS6B02G275600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb249570_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14054 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.973, evm.TU.LG19.740, evm.TU.LG24.730 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04470 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.223, evm.TU.Scaffold_8_RagTag.1527 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29124, nbisL1-mrna-8320, nbisL1-mrna-8397 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20246, nbisL1-mrna-6851 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15156, nbisL1-mrna-2073 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.138, evm.TU.utg000018l.108 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000213, Maker00003325 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2413, nbisL1-mrna-9451 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22752, nbisL1-mrna-6190 |
| Salicaceae | Populus euphratica | 3 | populus_peu03348, populus_peu31824, populus_peu34195 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631702, gene-LOC132645751 |
| Solanaceae | Solanum chilense | 2 | SOLCI004987200, SOLCI006564200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007836, gene-LOC107012789 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9943_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2610, TC09G2045 |
| Zosteraceae | Zostera marina | 2 | Zosma06g03780.v3.1, Zosma06g03790.v3.1 |