halophFGD

Basic Information

Locus ID: Ag2G01890

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: FBP

Description: Belongs to the FBPase class 1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	218781194	218783502	-	Ag2G01890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.32	44,835.34 Da	38.81	84.90	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00354	FBPase	83	411	0.0	IPR000146
Pfam	PF00316	Fructose-1-6-bisphosphatase, N-terminal domain	85	278	1.9E-55	IPR033391
Pfam	PF18913	Fructose-1-6-bisphosphatase, C-terminal domain	282	411	8.0E-51	IPR044015
SUPERFAMILY	SSF56655	Carbohydrate phosphatase	72	411	1.7E-112	-
Gene3D	G3DSA:3.40.190.80	-	280	411	2.2E-66	-
Gene3D	G3DSA:3.30.540.10	-	76	279	1.1E-86	-
PIRSF	PIRSF000904	FBPtase_SBPase	61	412	2.1E-112	IPR000146
PIRSF	PIRSF500210	FBPtase	72	412	2.5E-116	IPR028343
ProSitePatterns	PS00124	Fructose-1-6-bisphosphatase active site.	353	365	-	IPR020548
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	101	128	1.0E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	263	286	1.0E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	138	164	1.0E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	232	255	1.0E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	289	316	1.0E-63	IPR028343
PRINTS	PR00115	Fructose-1,6-bisphosphatase signature	387	412	1.0E-63	IPR028343
Hamap	MF_01855	Fructose-1,6-bisphosphatase class 1 [fbp].	77	412	38.189999	IPR000146

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0016791 (phosphatase activity) GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity) GO:0042578 (phosphoric ester hydrolase activity)

KEGG Pathway

KO Term:

K03841 (fructose-1,6-bisphosphatase I [EC:3.1.3.11])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00030 (Pentose phosphate pathway) map00030 (Pentose phosphate pathway) ko00051 (Fructose and mannose metabolism) map00051 (Fructose and mannose metabolism) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway)

Module:

M00003 (Gluconeogenesis, oxaloacetate => fructose-6P) M00165 (Reductive pentose phosphate cycle (Calvin cycle)) M00344 (Formaldehyde assimilation, xylulose monophosphate pathway)

Reaction:

R00762 (D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate) R04780 (beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G54050.1	high cyclic electron flow 1. Encodes HCEF1 (High Cyclic Electron Flow 1). Mutant phenotype: constitutively elevated electron flow (CEFI).
RefSeq	XP_017237533.1	PREDICTED: fructose-1,6-bisphosphatase, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	P22418	Fructose-1,6-bisphosphatase, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=2
TrEMBL	A0A166ARF3	fructose-bisphosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010436 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	31.228277	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	27.3305	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.086648	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.986412	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.316725	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.3117	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.813406	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.359559	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	123.729065	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	109.674416	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	108.628326	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	78.858437	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	105.625648	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	99.59993	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	74.297249	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	83.841949	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	99.844742	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	217.327774	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	301.939301	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	160.998032	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	180.595444	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	26.485092	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	23.79566	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	61.36739	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	60.870247	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	274.061981	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	206.685242	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	303.175232	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	200.793198	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	108.475159		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	143.03743		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	139.911896		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	78.055641		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	63.964146		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	57.180798		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	103.899742		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	104.589989		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	91.37809		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	345.46701	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	574.695618	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1113.425781	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	15.172066	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.004231	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.777425	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.427721	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	17.41831	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.32438	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	72.837959	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	49.271034	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	47.249313	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg32146
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2435
Amaranthaceae	Atriplex hortensis	1	Ah010674
Amaranthaceae	Beta vulgaris	1	BVRB_5g111310
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31970, Sbi_jg57360
Amaranthaceae	Salicornia europaea	1	Seu_jg25078
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022177
Amaranthaceae	Suaeda glauca	4	Sgl54001, Sgl54019, Sgl59335, Sgl59361
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000007276, gene:ENSEOMG00000024121 ... gene:ENSEOMG00000025124
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0014090, CQ.Regalona.r1.5BG0015360
Anacardiaceae	Pistacia vera	1	pistato.v30285180
Apiaceae	Apium graveolens	3	Ag2G01890, Ag7G02370, Ag8G00130
Arecaceae	Cocos nucifera	1	COCNU_16G008630
Arecaceae	Phoenix dactylifera	1	gene-LOC103722531
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.55.V1.1, AsparagusV1_08.3588.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G28156, Ftri3G25886
Brassicaceae	Arabidopsis thaliana	1	AT3G54050.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10010414m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g08330.v2.2, SpUn1292_0010.v2.2
Brassicaceae	Brassica nigra	2	BniB06g065670.2N, BniB08g068360.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1071
Casuarinaceae	Casuarina glauca	1	Cgl08G1096
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g18370
Dunaliellaceae	Dunaliella salina	1	Dusal.0106s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g00090
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1093
Plantaginaceae	Plantago ovata	1	Pov_00002807
Plumbaginaceae	Limonium bicolor	1	Lb4G26133
Poaceae	Echinochloa crus-galli	3	AH01.4229, BH01.4533, CH01.4835
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0242350, gene-QOZ80_3BG0285800
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0389260.1
Poaceae	Lolium multiflorum	1	gene-QYE76_069075
Poaceae	Oryza coarctata	1	Oco06G009500
Poaceae	Oryza sativa	1	LOC_Os03g16050.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G405600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0102211, Pt_Chr0102241
Poaceae	Sporobolus alterniflorus	4	Chr01G030670, Chr04G007450, Chr07G004190, Chr12G008940
Poaceae	Thinopyrum elongatum	1	Tel4E01G372200
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG012650, gene_TRIDC4BG037670
Poaceae	Triticum aestivum	3	TraesCS4A02G093100.1, TraesCS4B02G211400.1 ... TraesCS4D02G212000.1
Poaceae	Zea mays	1	Zm00001eb011940_P001
Poaceae	Zoysia japonica	3	nbis-gene-2133, nbis-gene-2134, nbis-gene-3793
Poaceae	Zoysia macrostachya	2	Zma_g1561, Zma_g3953
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.2188, evm.TU.LG17.1247
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g40380
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1751
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5542
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-1429
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3750
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.657
Rhizophoraceae	Kandelia obovata	1	Maker00016824
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4996
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-13709
Salicaceae	Populus euphratica	3	populus_peu11382, populus_peu25546, populus_peu25547
Solanaceae	Lycium barbarum	3	gene-LOC132606824, gene-LOC132606825, gene-LOC132630619
Solanaceae	Solanum chilense	3	SOLCI000860300, SOLCI000860400, SOLCI003086600
Solanaceae	Solanum pennellii	2	gene-LOC107002346, gene-LOC107031241
Tamaricaceae	Reaumuria soongarica	1	STRG.26850_chr04_-
Tamaricaceae	Tamarix chinensis	2	TC02G1828, TC07G0353
Zosteraceae	Zostera marina	1	Zosma01g41020.v3.1