halophFGD

Basic Information

Locus ID: Ag2G01872

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	213099062	213104531	-	Ag2G01872

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.39	19,067.07 Da	50.52	101.07	0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	1	140	5.6E-34	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1	141	2.87E-44	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1	146	4.8E-43	-
SMART	SM00220	serkin_6	1	148	3.9E-9	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	156	27.905476	IPR000719

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08269 (serine/threonine-protein kinase ULK2 [EC:2.7.11.1])

Pathway:

ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G53930.1	Protein kinase superfamily protein.
RefSeq	XP_017242828.1	PREDICTED: serine/threonine-protein kinase ATG1c-like [Daucus carota subsp. sativus]
Swiss-Prot	F4JBP3	Serine/threonine-protein kinase ATG1b OS=Arabidopsis thaliana OX=3702 GN=ATG1B PE=2 SV=1
TrEMBL	A0A166C762	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012134 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.57926	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.07963	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.247323	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.216316	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.25734	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.918201	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.979969	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.527005	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.978591	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.527166	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.366522	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.736924	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.528076	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.357596	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.576856	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.206237	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.825294	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.328744	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.878852	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.52179	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.33013	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.980724	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.704552	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.841359	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.304195	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.770824	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.586317	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.269972	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.952852	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.576832		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.538692		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.556894		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.836146		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.149703		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.303588		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.468503		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.777865		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.053827		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.763892	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.91543	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.539348	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.893424	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.012976	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	8.392842	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.080775	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.896408	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.777218	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.26406	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.142207	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.68483	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14836, jg32534
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23485, gene_2461
Amaranthaceae	Atriplex hortensis	2	Ah002224, Ah022761
Amaranthaceae	Beta vulgaris	2	BVRB_1g001970, BVRB_5g112680
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg31671, Sbi_jg31672, Sbi_jg3791, Sbi_jg49044 ... Sbi_jg57639, Sbi_jg57640
Amaranthaceae	Salicornia europaea	2	Seu_jg25321, Seu_jg6190
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000679, GOSA_00025815
Amaranthaceae	Suaeda glauca	5	Sgl10797, Sgl16150, Sgl59580, Sgl71885, Sgl75447
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000005846, gene:ENSEOMG00000014386 ... gene:ENSEOMG00000021373, gene:ENSEOMG00000021500, gene:ENSEOMG00000026655, gene:ENSEOMG00000034297, gene:ENSEOMG00000046973
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0004240, CQ.Regalona.r1.2BG0027040 ... CQ.Regalona.r1.5AG0014270, CQ.Regalona.r1.5BG0015480
Anacardiaceae	Pistacia vera	3	pistato.v30006670, pistato.v30284700, pistato.v30284720
Apiaceae	Apium graveolens	3	Ag10G01581, Ag2G01872, Ag8G00153
Arecaceae	Cocos nucifera	2	COCNU_10G006270, COCNU_16G008450
Arecaceae	Phoenix dactylifera	3	gene-LOC103702761, gene-LOC103716781, gene-LOC103720373
Asparagaceae	Asparagus officinalis	2	AsparagusV1_08.3609.V1.1, AsparagusV1_10.154.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G07909, Ftri3G18423
Brassicaceae	Arabidopsis thaliana	3	AT2G37840.1, AT3G53930.2, AT3G61960.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005839m.g.v1.0, Thhalv10010160m.g.v1.0 ... Thhalv10016391m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g01390.v2.2, Sp5g08470.v2.2
Brassicaceae	Brassica nigra	4	BniB06g052690.2N, BniB06g065820.2N, BniB08g024040.2N ... BniB08g076320.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0230, Ceq08G1103
Casuarinaceae	Casuarina glauca	2	Cgl02G0250, Cgl08G1128
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g18080
Dunaliellaceae	Dunaliella salina	1	Dusal.0421s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g34550
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5880
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1138, evm.TU.LG04.602
Plantaginaceae	Plantago ovata	4	Pov_00002854, Pov_00036177, Pov_00036178, Pov_00036179
Plumbaginaceae	Limonium bicolor	1	Lb5G27402
Poaceae	Echinochloa crus-galli	6	AH01.4219, AH01.5117, BH01.4526, BH01.5094, BH01.5252 ... CH01.4826
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0231550, gene-QOZ80_3AG0242460 ... gene-QOZ80_3BG0285710, gene-QOZ80_3BG0296340
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0389130.1, HORVU.MOREX.r3.4HG0412570.1
Poaceae	Lolium multiflorum	2	gene-QYE76_069021, gene-QYE76_071301
Poaceae	Oryza coarctata	4	Oco05G001300, Oco05G009220, Oco06G001260, Oco06G009580
Poaceae	Oryza sativa	2	LOC_Os03g02980.2, LOC_Os03g16130.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G404900, gene-BS78_01G501500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0100633, Pt_Chr0100651, Pt_Chr0102251, Pt_Chr0102260
Poaceae	Sporobolus alterniflorus	8	Chr01G030740, Chr01G038600, Chr04G006010, Chr04G007520 ... Chr07G004110, Chr07G005600, Chr12G000780, Chr12G008880
Poaceae	Thinopyrum elongatum	2	Tel4E01G370500, Tel4E01G569100
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG012750, gene_TRIDC4BG037560 ... gene_TRIDC4BG058440, gene_TRIDC5AG073540
Poaceae	Triticum aestivum	6	TraesCS4A02G093800.2, TraesCS4B02G210600.2 ... TraesCS4B02G347200.1, TraesCS4D02G211300.2, TraesCS4D02G342200.1, TraesCS5A02G515900.1
Poaceae	Zea mays	6	Zm00001eb001590_P001, Zm00001eb012000_P001 ... Zm00001eb290180_P001, Zm00001eb348970_P001, Zm00001eb397860_P002, Zm00001eb421190_P001
Poaceae	Zoysia japonica	2	nbis-gene-3111, nbis-gene-3782
Poaceae	Zoysia macrostachya	2	Zma_g2209, Zma_g3946
Portulacaceae	Portulaca oleracea	3	evm.TU.LG03.2581, evm.TU.LG19.1347, evm.TU.LG24.1341
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g39810
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.1721, evm.TU.Scaffold_2_RagTag.697 ... evm.TU.Scaffold_9_RagTag.656, evm.TU.Scaffold_9_RagTag.657
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-21559, nbisL1-mrna-4496, nbisL1-mrna-5515
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1454, nbisL1-mrna-3000, nbisL1-mrna-4712
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-3769, nbisL1-mrna-7458, nbisL1-mrna-9523
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.173, evm.TU.utg000009l.1061 ... evm.TU.utg000016l.640
Rhizophoraceae	Kandelia obovata	3	Maker00005335, Maker00016731, Maker00017553
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12736, nbisL1-mrna-1670, nbisL1-mrna-5011
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13686, nbisL1-mrna-16481, nbisL1-mrna-5380
Salicaceae	Populus euphratica	4	populus_peu11366, populus_peu25710, populus_peu27481 ... populus_peu31464
Solanaceae	Lycium barbarum	2	gene-LOC132607030, gene-LOC132625798
Solanaceae	Solanum chilense	2	SOLCI000200500, SOLCI005691800
Solanaceae	Solanum pennellii	2	gene-LOC107002361, gene-LOC107031744
Tamaricaceae	Reaumuria soongarica	3	STRG.26551_chr11_+, STRG.3100_chr01_+, gene_15821
Tamaricaceae	Tamarix chinensis	3	TC03G2098, TC07G0397, TC09G2407
Zosteraceae	Zostera marina	1	Zosma01g41160.v3.1