Basic Information
Locus ID:
Ag2G01834
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR repeats and ubiquitin-like domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 201998698 | 202004021 | + | Ag2G01834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 41,282.07 Da | 44.47 | 105.62 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 16 | 82 | 2.35073E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 16 | 85 | 7.3E-16 | IPR000626 |
| Pfam | PF13855 | Leucine rich repeat | 155 | 213 | 2.7E-8 | IPR001611 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 5 | 84 | 1.98E-20 | IPR029071 |
| SUPERFAMILY | SSF52058 | L domain-like | 132 | 331 | 2.72E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 8 | 87 | 4.3E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 110 | 354 | 5.2E-45 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 200 | 222 | 1.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 292 | 315 | 0.41 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 174 | 199 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 246 | 269 | 0.52 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 200 | 219 | 5.1 | - |
| SMART | SM00369 | LRR_typ_2 | 223 | 244 | 6.8 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 269 | 288 | 440.0 | - |
| SMART | SM00213 | ubq_7 | 14 | 84 | 4.1E-14 | IPR000626 |
| SMART | SM00364 | LRR_bac_2 | 246 | 265 | 28.0 | - |
| SMART | SM00364 | LRR_bac_2 | 223 | 242 | 15.0 | - |
| SMART | SM00364 | LRR_bac_2 | 292 | 311 | 27.0 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 14 | 85 | 16.886032 | IPR000626 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 202 | 223 | 8.52823 | IPR001611 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30105.1 | 0 | |
| RefSeq | XP_017249531.1 | PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Daucus carota subsp. sativus] | 0 |
| P0C895 | LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana OX=3702 GN=At2g30105 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164YVF9 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018217 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.91437 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.824631 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.791477 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.842501 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.307072 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.185314 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.027524 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.330118 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 49.057007 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 47.389301 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 47.819157 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 61.188976 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.192085 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.970119 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 34.619823 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.597916 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 39.185452 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.638048 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 28.378092 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.095913 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 34.805305 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.052425 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 47.633652 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.659977 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.971886 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.769863 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.54303 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 29.181686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.910912 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.615307 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.54628 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.585133 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.936205 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.587715 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.224634 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 31.211617 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 22.258972 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 26.918856 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.341759 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.524345 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.140857 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.12711 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.810556 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.776951 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.452919 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 16.726301 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 31.712849 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 44.963001 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 45.539814 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 40.856617 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8381 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5970 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028165 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26853, Sbi_jg33719 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003051 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73121, Sgl76668 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004611, gene:ENSEOMG00000038020 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001560, CQ.Regalona.r1.9BG0004140 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30061010, pistato.v30061020, pistato.v30061040 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01834 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013570 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710343 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.579.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05397 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30105.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g12670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014010.2N, BniB06g028120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1835 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18360 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0613s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1050 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025548 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14804 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2020, BH01.2198, CH01.2291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0126620, gene-QOZ80_2BG0182230 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0039370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011316 |
| Poaceae | Oryza coarctata | 1 | Oco19G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g31790.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G216600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502480, Pt_Chr0502506 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013570, Chr15G016120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G264700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021430, gene_TRIDC1BG026100 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G142500.1, TraesCS1B02G159200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046860_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48125 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16135 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1652, evm.TU.LG26.15 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.958 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30056 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15688 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16325 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.569 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015488 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4474 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20829 |
| Salicaceae | Populus euphratica | 1 | populus_peu01725 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605790, gene-LOC132605791 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021238 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2614 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0016 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13660.v3.1 |