Basic Information
Locus ID:
Ag2G01831
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ethylene-overproduction protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 201288367 | 201294168 | - | Ag2G01831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 109,608.24 Da | 41.94 | 93.23 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 787 | 815 | 0.015 | IPR019734 |
| Pfam | PF13181 | Tetratricopeptide repeat | 591 | 618 | 0.21 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 589 | 916 | 1.01E-18 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 456 | 857 | 7.21E-13 | IPR011990 |
| SUPERFAMILY | SSF54695 | POZ domain | 247 | 353 | 2.83E-5 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 246 | 395 | 1.5E-9 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 861 | 967 | 2.1E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 442 | 626 | 2.6E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 662 | 860 | 4.5E-16 | IPR011990 |
| SMART | SM00028 | tpr_5 | 786 | 819 | 0.019 | IPR019734 |
| SMART | SM00028 | tpr_5 | 712 | 745 | 82.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 916 | 948 | 440.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 586 | 619 | 0.032 | IPR019734 |
| SMART | SM00028 | tpr_5 | 457 | 490 | 170.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 820 | 851 | 440.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 882 | 915 | 58.0 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 786 | 819 | 8.2309 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51770.2 | tetratricopeptide repeat (TPR)-containing protein. Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS | 0 |
| RefSeq | XP_017252960.1 | PREDICTED: ethylene-overproduction protein 1 [Daucus carota subsp. sativus] | 0 |
| O65020 | Ethylene-overproduction protein 1 OS=Arabidopsis thaliana OX=3702 GN=ETO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A162A228 | Terpene synthase like-13 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018214 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.305506 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.523926 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.972103 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.360346 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.269272 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 18.013798 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.944269 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.32573 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 53.951767 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 51.931591 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 63.612442 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 49.098969 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 48.019199 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.902481 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.066362 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 27.665565 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 31.097094 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 45.294456 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 33.070496 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.359146 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 43.047367 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 35.348438 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.216862 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.964603 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.559975 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 46.086975 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 50.667732 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 39.415169 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.945511 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.386417 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 16.653992 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.716539 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.084568 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.565989 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.270735 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.626093 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.1803 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.203734 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 55.667397 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 38.01318 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 20.785131 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.838085 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 57.728798 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 97.667969 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 94.190125 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.517569 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 90.853523 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.65535 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 26.298193 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 33.004154 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32480 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4808, Sbi_jg7275 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001451 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51665, Sgl56974 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004208, gene:ENSEOMG00000023479 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010520, CQ.Regalona.r1.5BG0011030 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061070, pistato.v30267560 |
| Apiaceae | Apium graveolens | 1 | Ag2G01831 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706721 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G25809, Ftri12G22421 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G51770.2, AT5G58550.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010100m.g.v1.0, Thhalv10012604m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g20600.v2.2, Sp5g10500.v2.2, Sp6g20240.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g037950.2N, BniB02g074490.2N, BniB06g006360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0982, Ceq08G1837 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1000, Cgl08G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g32230, gene.Thate06g02770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5512 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.969, evm.TU.LG09.1053 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002688, Pov_00016341 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10681, Lb7G33968, Lb7G33977 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3973, BH01.4368, CH01.4607 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244460, gene-QOZ80_3BG0283570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008092, gene-QYE76_068726 |
| Poaceae | Oryza coarctata | 2 | Oco05G010770, Oco06G011000 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28830.1, LOC_Os03g18360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G387800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102434, Pt_Chr0102465 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G032160, Chr12G007460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G343700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015380, gene_TRIDC4BG033570 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111500.1, TraesCS4B02G192300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013600_P001, Zm00001eb396900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3604 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3828 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.443, evm.TU.LG04.2820, evm.TU.LG16.836 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37450 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_12_RagTag.99, evm.TU.Scaffold_13_RagTag.956 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24700, nbisL1-mrna-30059, nbisL1-mrna-4604 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12897, nbisL1-mrna-1364, nbisL1-mrna-15494 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16323, nbisL1-mrna-19406, nbisL1-mrna-3675 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.998, evm.TU.utg000015l.568 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006267, Maker00015658, Maker00017259, Maker00018123 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-2668, nbisL1-mrna-4473, nbisL1-mrna-4936 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11634, nbisL1-mrna-13784, nbisL1-mrna-16670 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01731, populus_peu11460, populus_peu36082 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630903, gene-LOC132630950 |
| Solanaceae | Solanum chilense | 2 | SOLCI000749400, SOLCI001511200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002738, gene-LOC107031354 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12187, gene_12260 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2778, TC06G0264 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20720.v3.1 |