halophFGD

Basic Information

Locus ID: Ag2G01819

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	199249933	199254002	-	Ag2G01819

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.77	106,513.69 Da	37.90	90.08	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	634	907	4.14418E-91	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	631	902	1.1E-45	IPR001245
Pfam	PF08263	Leucine rich repeat N-terminal domain	28	66	0.057	IPR013210
Pfam	PF08263	Leucine rich repeat N-terminal domain	332	367	0.0039	IPR013210
Pfam	PF13855	Leucine rich repeat	241	299	5.6E-8	IPR001611
SUPERFAMILY	SSF52058	L domain-like	329	436	2.33E-15	-
SUPERFAMILY	SSF52058	L domain-like	54	306	9.01E-42	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	615	929	1.26E-75	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	589	705	1.8E-31	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	329	455	1.6E-26	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	706	926	5.1E-56	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	27	326	3.2E-67	IPR032675
SMART	SM00369	LRR_typ_2	190	213	79.0	IPR003591
SMART	SM00369	LRR_typ_2	91	113	160.0	IPR003591
SMART	SM00369	LRR_typ_2	239	262	250.0	IPR003591
SMART	SM00369	LRR_typ_2	417	439	350.0	IPR003591
SMART	SM00220	serkin_6	628	904	3.8E-39	IPR000719
SMART	SM00369	LRR_typ_2	114	137	19.0	IPR003591
SMART	SM00369	LRR_typ_2	263	287	17.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	628	908	39.043068	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	634	656	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	753	765	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	469	517	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	469	512	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	938	974	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K00924 (receptor protein kinase TMK [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G66150.1	transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1)
RefSeq	XP_017254187.1	PREDICTED: receptor protein kinase TMK1-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	P43298	Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1
TrEMBL	A0A161YMM9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018201 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.082036	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.572467	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.196129	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	3.944939	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.827171	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.561129	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.3561	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.38658	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.739374	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.968563	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	26.074999	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.021877	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.155081	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	15.769014	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.081109	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.779025	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.757039	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.747489	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.049887	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.361338	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.071939	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	22.297218	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	26.561104	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	23.375713	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	22.748901	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.630532	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.180988	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.704756	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.936483	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.901014		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.865969		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.386979		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.457465		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.693409		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.312252		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.437331		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.208013		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.375203		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.458928	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.462505	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.792593	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.147942	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.25527	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.320998	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	4.473003	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.911915	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.584074	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.798292	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	17.953075	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.459419	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg15149, jg16419, jg32726, jg36042, jg3660, jg37631
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2303, gene_5719
Amaranthaceae	Atriplex hortensis	2	Ah003155, Ah027727
Amaranthaceae	Beta vulgaris	3	BVRB_5g098480, BVRB_5g098490, BVRB_7g171050
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1483, Sbi_jg15694, Sbi_jg35067, Sbi_jg56494
Amaranthaceae	Salicornia europaea	2	Seu_jg13726, Seu_jg3260
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001790, GOSA_00003427
Amaranthaceae	Suaeda glauca	4	Sgl51474, Sgl56762, Sgl72686, Sgl76225
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005613, gene:ENSEOMG00000021607 ... gene:ENSEOMG00000027159, gene:ENSEOMG00000039566
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0010940, CQ.Regalona.r1.5BG0011450 ... CQ.Regalona.r1.7AG0005510, CQ.Regalona.r1.9BG0000320
Anacardiaceae	Pistacia vera	2	pistato.v30055780, pistato.v30276610
Apiaceae	Apium graveolens	3	Ag10G01679, Ag10G02087, Ag2G01819
Arecaceae	Cocos nucifera	2	COCNU_01G017700, COCNU_11G003470
Arecaceae	Phoenix dactylifera	2	gene-LOC103721007, gene-LOC120105881
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.740.V1.1, AsparagusV1_09.128.V1.1 ... AsparagusV1_10.1683.V1.1
Asteraceae	Flaveria trinervia	1	Ftri17G32663
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G0781, Ceq05G1865
Casuarinaceae	Casuarina glauca	2	Cgl04G0892, Cgl05G1859
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g00430, gene.Cymno05g00260
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g18620, gene.Thate03g00710, gene.Thate09g01890
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8529
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1919
Plantaginaceae	Plantago ovata	2	Pov_00003693, Pov_00026592
Plumbaginaceae	Limonium bicolor	1	Lb4G26380
Poaceae	Echinochloa crus-galli	3	AH09.2775, BH09.3012, CH09.3178
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0298700, gene-QOZ80_4BG0329400 ... gene-QOZ80_6BG0479230
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0213660.1
Poaceae	Lolium multiflorum	2	gene-QYE76_047608, gene-QYE76_047689
Poaceae	Oryza coarctata	2	Oco07G019790, Oco08G019070
Poaceae	Oryza sativa	1	LOC_Os04g58910.1
Poaceae	Paspalum vaginatum	1	gene-BS78_06G291200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0307083
Poaceae	Sporobolus alterniflorus	3	Chr23G000470, Chr25G000350, Chr26G018750
Poaceae	Thinopyrum elongatum	2	Tel2E01G978400, Tel2E01G978600
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG078960, gene_TRIDC2BG087240
Poaceae	Triticum aestivum	3	TraesCS2B02G602000.1, TraesCS2D02G595000.1 ... TraesCSU02G035900.2
Poaceae	Zea mays	2	Zm00001eb091830_P001, Zm00001eb434220_P001
Poaceae	Zoysia japonica	2	nbis-gene-23245, nbis-gene-6248
Poaceae	Zoysia macrostachya	2	Zma_g20727, Zma_g22273
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.2788, evm.TU.LG07.729, evm.TU.LG15.208 ... evm.TU.LG16.874
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g01030, gene.Posoc05g21360
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.505, evm.TU.Scaffold_13_RagTag.537 ... evm.TU.Scaffold_1_RagTag.1339
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-30548, nbisL1-mrna-4136, nbisL1-mrna-6260
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12692, nbisL1-mrna-17031, nbisL1-mrna-4729 ... nbisL1-mrna-4859
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10155, nbisL1-mrna-15928, nbisL1-mrna-19763 ... nbisL1-mrna-4107
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000009l.613, evm.TU.utg000015l.284 ... evm.TU.utg000016l.400, evm.TU.utg000027l.255
Rhizophoraceae	Kandelia obovata	4	Maker00005975, Maker00015387, Maker00017282, Maker00018017
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12522, nbisL1-mrna-4201, nbisL1-mrna-7573
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13513, nbisL1-mrna-15255, nbisL1-mrna-5696
Salicaceae	Populus euphratica	5	populus_peu02459, populus_peu12415, populus_peu25942 ... populus_peu25947, populus_peu35567
Solanaceae	Lycium barbarum	3	gene-LOC132599373, gene-LOC132607224, gene-LOC132625917
Solanaceae	Solanum chilense	3	SOLCI002681900, SOLCI003871800, SOLCI004708800
Solanaceae	Solanum pennellii	3	gene-LOC107002659, gene-LOC107007879, gene-LOC107023779
Tamaricaceae	Reaumuria soongarica	2	STRG.26352_chr11_+, gene_13224
Tamaricaceae	Tamarix chinensis	2	TC03G1648, TC05G2740
Zosteraceae	Zostera marina	3	Zosma01g33630.v3.1, Zosma02g20590.v3.1, Zosma04g23670.v3.1