Basic Information
Locus ID:
Ag2G01803
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 195200350 | 195218326 | - | Ag2G01803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 152,853.20 Da | 44.72 | 84.76 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 293 | 5.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 801 | 838 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 589 | 1326 | 4.07E-15 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 131 | 617 | 1.4E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 193 | 512 | 6.1E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 192 | 7.2E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 538 | 882 | 3.7E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1165 | 1335 | 7.9E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1281 | 1318 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 0.06 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1033 | 1076 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1187 | 1237 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 342 | 0.068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 618 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 788 | 840 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 177 | 0.041 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 295 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 295 | 13.549507 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01860.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017253208.1 | PREDICTED: uncharacterized protein LOC108223445 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164YWK0 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.519222 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.271066 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.7527 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.018024 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.287358 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.291176 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.303284 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.699779 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.042171 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.965347 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.497574 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.865569 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.884057 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.343356 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.13951 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.64285 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.714028 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.470711 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.511168 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.946543 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.302331 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.36739 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.754092 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.767681 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.460536 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.50599 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.258231 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.315813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.287704 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.371482 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.953082 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.457394 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.515327 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.8066 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.772283 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.100468 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.673775 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.705503 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.705576 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.363448 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.472747 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.323435 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.856463 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.485571 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.099014 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.283769 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.818983 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.679833 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.640434 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.516357 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg9011, jg9012 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000023 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g122240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31207, Sbi_jg58067 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25690 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004561 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54622, Sgl59958 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004399, gene:ENSEOMG00000005961 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027700, CQ.Regalona.r1.5BG0029340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30007520 |
| Apiaceae | Apium graveolens | 1 | Ag2G01803 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721829 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2251.V1.1, AsparagusV1_03.53.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G16668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G01860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027621m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g044200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0526 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0544 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10220 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g12080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6207, nbisL1-mrna-9584 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.525 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016528 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22128 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.5050, BH01.5181, BH01.5182, Contig1042.26 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0417170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_071556, gene-QYE76_071562 |
| Poaceae | Oryza coarctata | 1 | Oco06G000670 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g02110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G509500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0100837 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G006650, Chr07G005000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G640100, Tel4E01G642200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG076450, gene_TRIDC5AG078410 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G539500.1, TraesCS5A02G556800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb404090_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-3178, nbis-gene-3179, nbis-gene-3180 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2259 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1342, evm.TU.LG09.635 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.700 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21520 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6309 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18584 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.656 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009278 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1640 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5336 |
| Salicaceae | Populus euphratica | 1 | populus_peu31392 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644899 |
| Solanaceae | Solanum chilense | 1 | SOLCI006419400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008348 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16384 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2842 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19680.v3.1 |