halophFGD

Basic Information

Locus ID: Ag2G01776

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Glycogen synthase kinase-3 homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	190151067	190154161	+	Ag2G01776

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.36	26,940.96 Da	39.47	90.12	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	57	102	7.8E-15	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	56	214	6.97E-33	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	54	102	7.2E-16	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	103	232	2.3E-29	-
SMART	SM00220	serkin_6	42	188	9.3E-7	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	188	13.898683	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	72	84	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K03083 (glycogen synthase kinase 3 beta [EC:2.7.11.26])

Pathway:

ko01521 (EGFR tyrosine kinase inhibitor resistance) map01521 (EGFR tyrosine kinase inhibitor resistance) ko04012 (ErbB signaling pathway) map04012 (ErbB signaling pathway) ko04062 (Chemokine signaling pathway) map04062 (Chemokine signaling pathway) ko04110 (Cell cycle) map04110 (Cell cycle) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04550 (Signaling pathways regulating pluripotency of stem cells) map04550 (Signaling pathways regulating pluripotency of stem cells) map04657 (IL-17 signaling pathway) map04660 (T cell receptor signaling pathway) map04662 (B cell receptor signaling pathway) ko04711 (Circadian rhythm - fly) map04711 (Circadian rhythm - fly) ko04916 (Melanogenesis) map04916 (Melanogenesis)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G26751.1	shaggy-related kinase 11. encodes a SHAGGY-related kinase involved in meristem organization.
RefSeq	XP_017253370.1	PREDICTED: shaggy-related protein kinase alpha-like [Daucus carota subsp. sativus]
Swiss-Prot	P43288	Shaggy-related protein kinase alpha OS=Arabidopsis thaliana OX=3702 GN=ASK1 PE=1 SV=3
TrEMBL	A0A164YWV1	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018256 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	59.845406	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	42.683708	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	33.805714	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	36.951546	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	37.899364	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	43.349598	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	38.960571	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	42.096821	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	126.060593	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	114.40049	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	119.93824	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	92.049171	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	74.293144	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	67.145935	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	53.858875	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	50.581165	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	41.009556	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	100.85569	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	74.787041	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	149.656403	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	120.288574	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	90.250038	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	110.845612	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	111.034607	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	113.850464	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	54.482056	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	53.499573	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	44.819927	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	47.294788	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	59.750118		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	46.784382		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	40.879997		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	96.006462		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	84.519035		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	168.410736		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	50.716469		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	46.452614		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	51.51173		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	31.357691	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	26.202703	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	26.173477	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	162.143677	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	214.778183	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	84.820587	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	73.403152	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	131.948212	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	69.401459	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	135.272324	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	126.973312	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	114.481407	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Beta vulgaris	1	BVRB_7g162470
Apiaceae	Apium graveolens	2	Ag10G01756, Ag2G01776