halophFGD

Basic Information

Locus ID: Ag2G01751

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	177995417	177995993	-	Ag2G01751

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.47	21,579.19 Da	66.13	64.01	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16745	RING-HC_AtRMA_like	39	89	1.71055E-25	-
Pfam	PF00097	Zinc finger, C3HC4 type (RING finger)	41	87	1.5E-9	IPR018957
SUPERFAMILY	SSF57850	RING/U-box	34	100	1.63E-15	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	10	143	3.0E-18	IPR013083
SMART	SM00184	ring_2	41	87	4.7E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	41	88	11.441815	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	56	65	-	IPR017907

Gene Ontology

Molecular Function:

GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10666 (E3 ubiquitin-protein ligase RNF5/185 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G27470.1	RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase.
RefSeq	XP_017253598.1	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q6R567	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1
TrEMBL	A0A164Y2V8	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017146 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.1097	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.221148	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.13375	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.104107		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.114446	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.204001	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg20294, jg22047, jg24457, jg24878, jg38293, jg38671
Aizoaceae	Mesembryanthemum crystallinum	3	gene_21048, gene_22244, gene_7442
Amaranthaceae	Atriplex hortensis	4	Ah008134, Ah008135, Ah012155, Ah018023
Amaranthaceae	Beta vulgaris	2	BVRB_8g183250, BVRB_9g206580
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg11794, Sbi_jg18675, Sbi_jg26105, Sbi_jg37114 ... Sbi_jg46609, Sbi_jg51833, Sbi_jg9946
Amaranthaceae	Salicornia europaea	3	Seu_jg18781, Seu_jg21028, Seu_jg4939
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00006893, GOSA_00016791, GOSA_00017032
Amaranthaceae	Suaeda glauca	4	Sgl12979, Sgl28212, Sgl80066, Sgl82503
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010123, gene:ENSEOMG00000011280 ... gene:ENSEOMG00000017467, gene:ENSEOMG00000033100, gene:ENSEOMG00000039857, gene:ENSEOMG00000042624, gene:ENSEOMG00000045911
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4BG0020520, CQ.Regalona.r1.8AG0005230 ... CQ.Regalona.r1.8BG0005330, CQ.Regalona.r1.9AG0007250, CQ.Regalona.r1.9BG0015150
Anacardiaceae	Pistacia vera	1	pistato.v30088710
Apiaceae	Apium graveolens	5	Ag11G03384, Ag2G01751, Ag7G00742, Ag7G01379, AgUnG00885
Arecaceae	Cocos nucifera	4	COCNU_07G012380, COCNU_07G012390, COCNU_08G010110 ... contig69389235G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103698249, gene-LOC103698721, gene-LOC103712095 ... gene-LOC103721864
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.914.V1.1, AsparagusV1_04.767.V1.1 ... AsparagusV1_07.2081.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G14743, Ftri14G00577, Ftri15G14345, Ftri5G12026 ... Ftri5G26840
Brassicaceae	Arabidopsis thaliana	3	AT4G03510.1, AT4G27470.1, AT4G28270.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10014518m.g.v1.0, Thhalv10026108m.g.v1.0 ... Thhalv10026313m.g.v1.0, Thhalv10028914m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g03530.v2.2, Sp7g25410.v2.2, Sp7g26230.v2.2
Brassicaceae	Brassica nigra	7	BniB02g082960.2N, BniB02g083450.2N, BniB03g011830.2N ... BniB03g012100.2N, BniB05g009260.2N, BniB05g009910.2N, BniB08g046290.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1023, Ceq01G2296, Ceq02G2607
Casuarinaceae	Casuarina glauca	4	Cgl01G1136, Cgl01G1194, Cgl01G2599, Cgl02G2691
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g00520
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g00910, gene.Thate08g23080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1073, nbisL1-mrna-5757, nbisL1-mrna-9196 ... nbisL1-mrna-9382, nbisL1-mrna-9385
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG04.1858, evm.TU.LG05.1368, evm.TU.LG05.1616 ... evm.TU.LG12.963
Plantaginaceae	Plantago ovata	4	Pov_00004522, Pov_00005617, Pov_00008482, Pov_00031366
Plumbaginaceae	Limonium bicolor	3	Lb1G00151, Lb2G12182, Lb3G19283
Poaceae	Echinochloa crus-galli	4	AH07.2766, BH07.2575, CH07.2639, CH09.1999
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0138790, gene-QOZ80_2BG0194470 ... gene-QOZ80_4AG0309570, gene-QOZ80_4BG0340620
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0183830.1.CDS1 ... HORVU.MOREX.r3.6HG0598420.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_023940, gene-QYE76_023941, gene-QYE76_045161 ... gene-QYE76_045222
Poaceae	Oryza coarctata	4	Oco03G016380, Oco04G017120, Oco07G011330, Oco08G011090
Poaceae	Oryza sativa	2	LOC_Os02g42690.3, LOC_Os04g44820.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G208200, gene-BS78_06G168500
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0301935
Poaceae	Sporobolus alterniflorus	6	Chr09G025030, Chr13G006490, Chr23G008090, Chr25G006640 ... Chr26G011630, Chr30G006550
Poaceae	Thinopyrum elongatum	2	Tel2E01G642700, Tel6E01G448900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG053920, gene_TRIDC2BG056650 ... gene_TRIDC5AG007650, gene_TRIDC5BG009080, gene_TRIDC6AG036440, gene_TRIDC6BG043240
Poaceae	Triticum aestivum	6	TraesCS2A02G372600.1.cds1, TraesCS2B02G389600.1.cds1 ... TraesCS2D02G368800.1.cds1, TraesCS6A02G236100.1.cds1, TraesCS6B02G264500.1.cds1, TraesCS6D02G218600.1.cds1
Poaceae	Zea mays	3	Zm00001eb075760_P001, Zm00001eb248510_P001 ... Zm00001eb427210_P001
Poaceae	Zoysia japonica	2	nbis-gene-37161, nbis-gene-9363
Poaceae	Zoysia macrostachya	3	Zma_g13980, Zma_g20108, Zma_g21672
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.54, evm.TU.LG02.707, evm.TU.LG04.696 ... evm.TU.LG06.1079, evm.TU.LG07.1020, evm.TU.LG11.442, evm.TU.LG18.1850, evm.TU.LG20.55, evm.TU.LG20.56
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g04570
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_13_RagTag.229, evm.TU.Scaffold_5_RagTag.1365 ... evm.TU.Scaffold_9_RagTag.1251, evm.TU.Scaffold_9_RagTag.163
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-11217, nbisL1-mrna-11880, nbisL1-mrna-20918 ... nbisL1-mrna-21896, nbisL1-mrna-29477
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-17419, nbisL1-mrna-21100, nbisL1-mrna-2412 ... nbisL1-mrna-8702, nbisL1-mrna-9586
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11097, nbisL1-mrna-20907, nbisL1-mrna-21237 ... nbisL1-mrna-7534
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.36, add.evm.TU.utg000006l.322 ... add.evm.TU.utg000006l.48, add.evm.TU.utg000015l.51, evm.TU.utg000003l.773
Rhizophoraceae	Kandelia obovata	2	Maker00009557, Maker00013106
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17227, nbisL1-mrna-19124, nbisL1-mrna-19446 ... nbisL1-mrna-20385, nbisL1-mrna-20817
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-16893, nbisL1-mrna-21690, nbisL1-mrna-4824 ... nbisL1-mrna-7098, nbisL1-mrna-7135
Salicaceae	Populus euphratica	6	populus_peu00509, populus_peu10071, populus_peu16836 ... populus_peu17563, populus_peu18191, populus_peu18748
Solanaceae	Lycium barbarum	12	gene-LOC132617177, gene-LOC132617807, gene-LOC132622787 ... gene-LOC132622985, gene-LOC132630412, gene-LOC132630419, gene-LOC132630461, gene-LOC132630468, gene-LOC132630486, gene-LOC132636480, gene-LOC132636598, gene-LOC132636599
Solanaceae	Solanum chilense	8	SOLCI000578200, SOLCI002997100, SOLCI005738900 ... SOLCI006342800, SOLCI006368600, SOLCI006368700, SOLCI006693000, SOLCI007033200
Solanaceae	Solanum pennellii	8	gene-LOC107005321, gene-LOC107006800, gene-LOC107009142 ... gene-LOC107024103, gene-LOC107026408, gene-LOC107032175, gene-LOC107032257, gene-LOC107032493
Tamaricaceae	Reaumuria soongarica	3	STRG.27107_chr04_+, gene_13458, gene_16567
Tamaricaceae	Tamarix chinensis	3	TC01G2620, TC07G1284, TC07G2141
Zosteraceae	Zostera marina	3	Zosma01g35250.v3.1, Zosma03g16890.v3.1, Zosma05g24220.v3.1