Basic Information
Locus ID:
Ag2G01740
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 174021640 | 174026980 | + | Ag2G01740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 61,313.49 Da | 29.80 | 84.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09913 | EHD | 199 | 443 | 1.76586E-147 | - |
| CDD | cd00052 | EH | 19 | 84 | 3.39932E-22 | IPR000261 |
| Pfam | PF00350 | Dynamin family | 200 | 359 | 7.1E-11 | IPR045063 |
| Pfam | PF18150 | Domain of unknown function (DUF5600) | 435 | 536 | 8.4E-36 | IPR040990 |
| Pfam | PF16880 | N-terminal EH-domain containing protein | 163 | 195 | 1.9E-15 | IPR031692 |
| Pfam | PF12763 | Cytoskeletal-regulatory complex EF hand | 19 | 80 | 8.3E-5 | IPR000261 |
| SUPERFAMILY | SSF47473 | EF-hand | 11 | 86 | 3.53E-20 | IPR011992 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 190 | 467 | 2.39E-32 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 200 | 428 | 5.9E-170 | IPR027417 |
| Gene3D | G3DSA:1.10.238.10 | - | 9 | 108 | 6.1E-25 | - |
| Gene3D | G3DSA:1.10.268.20 | - | 164 | 536 | 5.9E-170 | - |
| SMART | SM00054 | efh_1 | 18 | 46 | 7.7 | IPR002048 |
| SMART | SM00027 | eh_3 | 8 | 103 | 1.2E-12 | IPR000261 |
| SMART | SM00054 | efh_1 | 52 | 80 | 2.5 | IPR002048 |
| ProSiteProfiles | PS50031 | EH domain profile. | 15 | 104 | 12.986443 | IPR000261 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 9.157488 | IPR002048 |
| ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 194 | 430 | 30.238552 | IPR030381 |
| Coils | Coil | Coil | 468 | 488 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20290.1 | EPS15 homology domain 1. Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520). | 0 |
| RefSeq | XP_017252907.1 | PREDICTED: EH domain-containing protein 1 [Daucus carota subsp. sativus] | 0 |
| Q94CF0 | EH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EHD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AY70 | Putative EH domain-containing protein 1 OS=Davidia involucrata OX=16924 GN=Din_030516 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.465069 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.477936 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.306311 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.647125 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.608727 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.600716 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.218452 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.168709 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.373894 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.078163 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.725918 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.990963 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 30.187418 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.698734 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 39.144112 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 38.905663 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 36.763065 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.343756 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.943926 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.670462 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.500593 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.597803 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.054209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.663246 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 24.52317 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.631258 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 26.507401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.729141 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.93145 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.847505 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.557613 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.116756 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.074158 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.673673 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.526433 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.512718 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.517327 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.648164 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.582215 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.274175 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.63364 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.007123 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.274836 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.523346 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.198535 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.433139 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.519083 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.356159 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 31.843349 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.255711 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21554, jg21856 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_63, gene_7214, gene_7219 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008839, Ah017421 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g089020, BVRB_4g089080 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg36718, Sbi_jg40240, Sbi_jg50224 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1824, Seu_jg4658 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011402, GOSA_00017438, GOSA_00017445 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl23461, Sgl28581, Sgl28588, Sgl28756, Sgl30648, Sgl41582 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009032, gene:ENSEOMG00000009502 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0023510, CQ.Regalona.r1.4BG0024830 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30067850, pistato.v30156090, pistato.v30156100 |
| Apiaceae | Apium graveolens | 2 | Ag2G01740, Ag9G01606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714098, gene-LOC103718510 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.146.V1.1, AsparagusV1_05.3219.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G01594, Ftri15G04439, Ftri18G32217 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G20290.1, AT4G05520.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020459m.g.v1.0, Thhalv10028561m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g18320.v2.2, Sp6g04800.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g043600.2N, BniB07g050680.2N, BniB08g048330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1351 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1511, Cgl04G1853 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09010 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00030.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g26340, gene.Thate09g11380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9072 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1931, evm.TU.LG12.1197 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00004355, Pov_00005666, Pov_00006004 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03428 |
| Poaceae | Echinochloa crus-galli | 8 | AH06.2778, AH07.416, AH09.2652, BH06.2578, BH07.540 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0102070, gene-QOZ80_2BG0155400 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0213030.1, HORVU.MOREX.r3.6HG0564470.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_020384, gene-QYE76_035637, gene-QYE76_046880 |
| Poaceae | Oryza coarctata | 5 | Oco03G002750, Oco04G002740, Oco08G018010, Oco11G015660 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g06340.1, LOC_Os04g57350.1, LOC_Os06g47330.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_04G043000, gene-BS78_06G276800, gene-BS78_K003100 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0200231, Pt_Chr0202576, Pt_Chr0202595, Pt_Chr0300313 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G032160, Chr05G010180, Chr11G001760, Chr15G026080 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G924300, Tel6E01G259700, Tel7E01G742400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG075710, gene_TRIDC2BG082790 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G542800.1, TraesCS2B02G572600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb066880_P001, Zm00001eb207790_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-23150, nbis-gene-33716, nbis-gene-55034 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12207, Zma_g20650, Zma_g31035 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.1942, evm.TU.LG01.690, evm.TU.LG02.504 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16910 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.1039 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23988, nbisL1-mrna-8701 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18825, nbisL1-mrna-423 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15098, nbisL1-mrna-21735 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.68, evm.TU.utg000027l.10 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003071, Maker00017420 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10728, nbisL1-mrna-9414 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22685, nbisL1-mrna-23310 |
| Salicaceae | Populus euphratica | 3 | populus_peu00947, populus_peu10426, populus_peu18419 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132615799, gene-LOC132617707, gene-LOC132627305 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001045200, SOLCI003127800, SOLCI003923800 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001829, gene-LOC107003174, gene-LOC107007673 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13114, gene_16655, gene_2457 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2697, TC07G0876, TC08G0162 |
| Zosteraceae | Zostera marina | 2 | Zosma03g04650.v3.1, Zosma03g17680.v3.1 |