Basic Information
Locus ID:
Ag2G01736
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 171711023 | 171716856 | - | Ag2G01736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 57,187.36 Da | 49.03 | 71.15 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 469 | 510 | 4.60402E-15 | - |
| Pfam | PF12678 | RING-H2 zinc finger domain | 468 | 510 | 2.7E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 468 | 513 | 4.35E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 446 | 515 | 3.1E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 469 | 509 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 469 | 510 | 12.208971 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017253920.1 | PREDICTED: uncharacterized protein LOC108223952 [Daucus carota subsp. sativus] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164Y237 | E3 ubiquitin-protein ligase ZFP1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.103628 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.510914 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.031763 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.466642 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.441339 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.302202 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.019627 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.917292 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.043518 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.153107 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.769114 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.124994 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.985329 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.024199 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.906685 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.660812 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.899746 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.992756 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.584875 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.483744 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.809799 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.949362 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.955139 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.085939 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.695761 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.52466 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.210264 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 15.35775 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.917587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.201498 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.313906 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.952692 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.822103 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.748425 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.57272 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.813912 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.424974 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.522375 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 11.21032 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.2761 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.723595 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 30.015228 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.307032 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.131344 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 22.828873 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.16844 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.593267 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.25354 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.585005 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.896616 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19104, jg21369, jg38258 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007902 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086250 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg19228, Sbi_jg19357, Sbi_jg19358, Sbi_jg19364 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg18001, Seu_jg18004, Seu_jg5482 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006780, GOSA_00024658 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23271, Sgl28342, Sgl60947 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000009139, gene:ENSEOMG00000029784 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0018750, CQ.Regalona.r1.4BG0019230 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30161940 |
| Apiaceae | Apium graveolens | 2 | Ag2G01736, Ag3G00411 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G006370, scaffold000110G000020 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697413, gene-LOC103703384, gene-LOC103713214 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.288.V1.1, AsparagusV1_05.2870.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri14G13273, Ftri3G01693, Ftri4G05974, Ftri8G26665 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G53190.1, AT3G15070.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011416m.g.v1.0, Thhalv10020603m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g39770.v2.2, Sp3g13270.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g049950.2N, BniB04g056140.2N, BniB06g027570.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0999 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1116, Cgl01G1171 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g11530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g13010 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9232 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1533 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00009127, Pov_00030986 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G32328, Lb6G32332 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2682, AH05.1396, BH02.2759, BH05.1565, CH02.3777 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0027930, gene-QOZ80_1BG0078100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088310.1, HORVU.MOREX.r3.3HG0278640.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015453, gene-QYE76_054471 |
| Poaceae | Oryza coarctata | 3 | Oco01G016740, Oco02G016950, Oco10G016640 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g47740.1, LOC_Os05g48970.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G224500, gene-BS78_09G235600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102587, Pt_Chr0202257, Pt_Chr0204411, Pt_Chr0605089 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G015650, Chr02G013270, Chr03G013080, Chr05G020480 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G650600, Tel3E01G412700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG058690, gene_TRIDC1BG067560 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G398300.8, TraesCS1B02G426200.9 ... |
| Poaceae | Zea mays | 4 | Zm00001eb295900_P001, Zm00001eb343770_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-13655, nbis-gene-13656, nbis-gene-26028 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10837, Zma_g27381, Zma_g8398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.772, evm.TU.LG09.1945 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.175, evm.TU.Scaffold_9_RagTag.157 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11149, nbisL1-mrna-11156, nbisL1-mrna-21803 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2773, nbisL1-mrna-9755 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10613, nbisL1-mrna-7544 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.108, evm.TU.utg000006l.110 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013858, Maker00017724 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-6734, nbisL1-mrna-9132 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21685, nbisL1-mrna-7128 |
| Salicaceae | Populus euphratica | 2 | populus_peu00841, populus_peu17775 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132617654, gene-LOC132618987, gene-LOC132618988 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003394200, SOLCI003587300, SOLCI006048100 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002485, gene-LOC107007546, gene-LOC107024689 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3333_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0147 |
| Zosteraceae | Zostera marina | 1 | Zosma06g12460.v3.1 |