Basic Information
Locus ID:
Ag2G01729
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Probably involved in the biogenesis of the COX complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 169330966 | 169333586 | - | Ag2G01729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 9,701.02 Da | 72.50 | 72.98 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 52 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017235605.1 | PREDICTED: surfeit locus protein 1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166I980 | SURF1-like protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.881588 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.260232 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.865399 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.610228 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.380852 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.893806 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.00319 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.573727 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.621522 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.977368 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.133534 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.423982 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.944821 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.071273 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.067452 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.093342 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.249579 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.670506 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.73696 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.206952 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.292228 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.261217 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.99417 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.784868 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.13947 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.481771 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.282907 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.425534 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.923769 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.673175 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.695938 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.391178 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.885353 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.934465 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.527864 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.779372 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.010967 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.060972 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.451535 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.11714 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.017766 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.22277 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.907838 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.006758 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.6408 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.032379 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.925633 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.49772 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.024755 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.86508 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10511 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006165 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16773, Sbi_jg16776, Sbi_jg61306 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23035 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008188 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24865, Sgl30012 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009064, gene:ENSEOMG00000028273 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010820, CQ.Regalona.r1.4BG0010990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30149060 |
| Apiaceae | Apium graveolens | 2 | Ag2G01729, Ag7G02029 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717776 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2477.V1.1, AsparagusV1_03.2606.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G00687 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G48510.1, AT3G17910.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011732m.g.v1.0, Thhalv10021015m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046880.2N, BniB07g052290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2813 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2966 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g13760, gene.Cymno06g01720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0153s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.97 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023402, Pov_00033497 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37934, Lb3G16628 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4629, Contig181.40 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0290380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398990.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070119 |
| Poaceae | Oryza coarctata | 2 | Oco05G005620, Oco06G005790 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G445400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101546, Pt_Chr0101560 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G026730, Chr04G001900, Chr07G009360, Chr12G012630 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G439300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006230, gene_TRIDC4BG045000 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G044900.2, TraesCS4B02G260400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb007820_P003, Zm00001eb099110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4155 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4207 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1912 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.688 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28674 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1677 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.442 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000355 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1650 |
| Salicaceae | Populus euphratica | 1 | populus_peu29694 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633190 |
| Solanaceae | Solanum chilense | 1 | SOLCI000573000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012562 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13927 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04040.v3.1 |