Basic Information
Locus ID:
Ag2G01727
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 SUMO-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 168790678 | 168794562 | + | Ag2G01727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 24,841.03 Da | 58.70 | 88.69 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15150.1 | RING/U-box superfamily protein. Encodes a SUMO E3 ligase that regulates endocycle onset and meristem maintenance. | 0 |
| RefSeq | XP_017250242.1 | PREDICTED: E3 SUMO-protein ligase MMS21 [Daucus carota subsp. sativus] | 0 |
| Q8GYH7 | E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana OX=3702 GN=MMS21 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XQI6 | SP-RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017121 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.395824 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.762821 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.447444 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.236585 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.888398 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.682955 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.906508 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.029253 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 28.97543 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 26.869419 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.926983 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 33.249187 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.8608 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.357538 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.804537 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.749891 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.093176 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.549277 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.874839 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.319189 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.502481 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.097061 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.105162 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.810719 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.458561 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.392651 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.306686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.541292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.741053 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.774892 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.507321 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.159011 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.407204 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.465615 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.286158 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.984227 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.400676 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.178874 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 13.715183 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.777171 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.475499 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.590541 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.943514 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.017795 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.131598 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.165501 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.057701 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.095131 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.136101 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.628756 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19487 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7483 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007963 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19245, Sbi_jg37658 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5499 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006805 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl23250, Sgl28320, Sgl28408 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030090, gene:ENSEOMG00000040490 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0019050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30161790 |
| Apiaceae | Apium graveolens | 1 | Ag2G01727 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G006230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713161 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2961.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23756 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021394m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g049890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1007 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1125, Cgl01G1180 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g04020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1551 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031294 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15531 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1403, BH01.5230, BH05.1572, CH05.1773 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0363240, gene-QOZ80_5BG0411330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0087790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015524 |
| Poaceae | Oryza coarctata | 1 | Oco09G016790 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g48880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G234800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204422, Pt_Chr0505772, Pt_Chr0506053 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G001320 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G649500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG058360, gene_TRIDC1BG067250 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G396600.1, TraesCS1B02G424800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb295840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24858 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28801 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.938, evm.TU.LG23.83 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.177 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11151, nbisL1-mrna-11158 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9757 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10611 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.112 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013544 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9134 |
| Salicaceae | Populus euphratica | 1 | populus_peu17344 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618655 |
| Solanaceae | Solanum chilense | 1 | SOLCI002318300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024476 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7715 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0167 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02160.v3.1 |