Basic Information
Locus ID:
Ag2G01718
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
FPS1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 166066030 | 166070065 | + | Ag2G01718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 39,561.19 Da | 33.95 | 97.46 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 33 | 341 | 4.25999E-78 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 35 | 297 | 1.9E-88 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 10 | 342 | 3.96E-87 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 4 | 342 | 4.2E-134 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 91 | 105 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 225 | 237 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 33 | 341 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 33 | 341 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17190.1 | farnesyl diphosphate synthase 2. Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers. | 0 |
| RefSeq | XP_017248920.1 | PREDICTED: farnesyl pyrophosphate synthase 1 [Daucus carota subsp. sativus] | 0 |
| Q4JHN6 | Farnesyl pyrophosphate synthase OS=Panax ginseng OX=4054 GN=FPS PE=2 SV=1 | 0 | |
| TrEMBL | A0A164Y0S3 | Farnesyl pyrophosphate synthase 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017068 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 139.133621 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 77.028275 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 103.12822 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 89.373962 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 91.79097 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 87.033859 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 107.735359 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 54.122494 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 113.229927 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 111.409554 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 116.099113 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 114.50885 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 103.248482 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 90.709534 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 50.984997 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 59.231808 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 67.427917 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.691101 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 65.577614 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 43.60297 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 54.447689 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 85.813774 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 104.971153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 91.917442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 84.682533 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 124.986206 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 80.102158 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 63.171604 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 76.513123 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.034103 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 41.035114 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 41.146317 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 35.972679 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 78.608444 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 33.265461 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 36.561127 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 26.975761 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 36.07233 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 74.179039 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 42.635605 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 27.726435 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 43.011642 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 41.200695 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 80.701897 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 80.094238 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 57.144505 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 62.789623 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 103.874115 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 100.424065 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 90.270615 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21765, jg24630 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12122, gene_3 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah009100, Ah017240, Ah017906, Ah017907 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090750, BVRB_8g184270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18552, Sbi_jg36957 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4823 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017305 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23593, Sgl28793, Sgl28801, Sgl46569 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000010089, gene:ENSEOMG00000010644 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.2AG0007380, CQ.Regalona.r1.2BG0000590 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151850, pistato.v30152140 |
| Apiaceae | Apium graveolens | 1 | Ag2G01718 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008660, COCNU_14G005730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708154, gene-LOC103709296 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1354.V1.1, AsparagusV1_02.1627.V1.1 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri15G04615, Ftri15G21532, Ftri15G27378, Ftri16G07414 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17190.1, AT5G47770.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000912m.g.v1.0, Thhalv10025643m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12470.v2.2, Sp7g17010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064330.2N, BniB04g010020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1516, Ceq02G1421 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1678, Cgl02G1466 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1212s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g00260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9021 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2072, evm.TU.LG12.1291 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039157 |
| Plumbaginaceae | Limonium bicolor | 16 | Lb0G37119, Lb0G37120, Lb1G01399, Lb2G14145, Lb3G15725 ... |
| Poaceae | Echinochloa crus-galli | 13 | AH02.2849, AH02.2888, AH05.1560, AH09.2567, AH09.2568 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1AG0030170, gene-QOZ80_1BG0080220 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0079800.1, HORVU.MOREX.r3.2HG0202590.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016239, gene-QYE76_047038, gene-QYE76_047040 ... |
| Poaceae | Oryza coarctata | 9 | Oco01G018030, Oco01G018300, Oco02G018190, Oco02G018540 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g50050.1, LOC_Os01g50760.1, LOC_Os04g56210.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_03G242500, gene-BS78_03G247700 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300549, Pt_Chr0300570, Pt_Chr0307281, Pt_Chr0503835 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G014950, Chr02G011820, Chr05G021850, Chr18G015010 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G593700, Tel2E01G849200, Tel3E01G427600 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG053720, gene_TRIDC1BG061520 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS1A02G365800.1, TraesCS1B02G383400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb155590_P001, Zm00001eb342550_P002 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-12673, nbis-gene-13789, nbis-gene-24985 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g10970, Zma_g20595, Zma_g22130, Zma_g27306, Zma_g28713 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG02.616, evm.TU.LG09.2062, evm.TU.LG15.1460 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g22310, gene.Posoc02g22320 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.51, evm.TU.Scaffold_8_RagTag.349 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-19700, nbisL1-mrna-19701, nbisL1-mrna-20058 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15503 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17954, nbisL1-mrna-22351 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.769, evm.TU.utg000028l.29 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003684, Maker00010753 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3232, nbisL1-mrna-7985 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11264, nbisL1-mrna-22574 |
| Salicaceae | Populus euphratica | 1 | populus_peu10476 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627819, gene-LOC132636283 |
| Solanaceae | Solanum chilense | 3 | SOLCI005895800, SOLCI007039200, SOLCI007039400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001694, gene-LOC107001695, gene-LOC107007637 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17882, gene_4063 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2572, TC06G0542 |
| Zosteraceae | Zostera marina | 2 | Zosma01g03700.v3.1, Zosma04g17780.v3.1 |