Basic Information
Locus ID:
Ag2G01703
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WLM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 161107777 | 161112036 | - | Ag2G01703 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 46,629.28 Da | 52.14 | 72.67 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 346 | 370 | 9.8E-6 | IPR001876 |
| Pfam | PF08325 | WLM domain | 8 | 203 | 2.3E-60 | IPR013536 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 342 | 369 | 8.37E-7 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 340 | 379 | 2.1E-7 | - |
| SMART | SM00547 | zf_4 | 344 | 368 | 0.001 | IPR001876 |
| SMART | SM00547 | zf_4 | 378 | 402 | 0.19 | IPR001876 |
| ProSiteProfiles | PS51397 | WLM domain profile. | 1 | 203 | 45.951523 | IPR013536 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 376 | 405 | 8.174064 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 342 | 371 | 8.851596 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 380 | 399 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 346 | 365 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 245 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55915.1 | zinc ion binding. | 0 |
| RefSeq | XP_017250203.1 | PREDICTED: uncharacterized protein LOC108220844 [Daucus carota subsp. sativus] | 0 |
| P38838 | DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=WSS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164Y197 | Alkaline/neutral invertase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017083 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.292502 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.400799 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.34225 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.877221 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.599485 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.037579 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.960551 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.064486 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.196741 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.940769 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.821632 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.219479 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.253982 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.806477 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.133146 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.865235 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.034586 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.160227 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.488927 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.748352 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.789372 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.793238 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.339738 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.030926 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.716951 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.77357 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.591663 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.130925 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.879909 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.666021 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.84736 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.851624 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.412294 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.827842 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.800499 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.10634 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.587872 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.030265 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.090321 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.72579 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.67151 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.042656 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.53447 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.010719 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.064257 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.858902 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.151308 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.136645 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.129169 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.53075 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17956, jg24598 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12147 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009024, Ah028602 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090090 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18482, Sbi_jg26803, Sbi_jg33766, Sbi_jg36882 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4768, Seu_jg8454 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011702, GOSA_00017358 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23533, Sgl28662, Sgl73568, Sgl77119 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005205, gene:ENSEOMG00000006799 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.1BG0007060, CQ.Regalona.r1.1BG0007230 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30130900, pistato.v30152750, pistato.v30155050 |
| Apiaceae | Apium graveolens | 2 | Ag2G01703, Ag6G01348 |
| Arecaceae | Cocos nucifera | 1 | scaffold019932G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718405 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.2527.V1.1, AsparagusV1_08.3169.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G11350, Ftri15G12980 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55915.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011589m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g000470.2N, BniB07g056380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1468 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1633 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g07820 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0780s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g39930 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.644, evm.TU.LG05.2019 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00014379, Pov_00028884, Pov_00041472 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G37810, Lb1G07355, Lb7G34403, Lb7G34404, Lb7G34410 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.600, BH06.666, CH06.679 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0511890, gene-QOZ80_6BG0463790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0660300.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_016413, gene-QYE76_016415, gene-QYE76_027497 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G004210, Oco12G004210 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g09170.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G070400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405191, Pt_Chr0405782 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021200, Chr14G003030, Chr21G002280 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G539700, Tel5E01G542400, Tel5E01G542700 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG016500, gene_TRIDC7AG018980 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4D02G333700.1, TraesCS7A02G154800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb374280_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4971 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29252 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1210, evm.TU.LG12.549, evm.TU.LG23.287 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g14160, gene.Posoc03g16490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1207, evm.TU.Scaffold_8_RagTag.1634 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3869, nbisL1-mrna-8775 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-386 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15063 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.497, evm.TU.utg000018l.41 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003488, Maker00005018 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12399, nbisL1-mrna-9383 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23765, nbisL1-mrna-5514 |
| Salicaceae | Populus euphratica | 4 | populus_peu05997, populus_peu17818, populus_peu17819 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633576, gene-LOC132636297 |
| Solanaceae | Solanum chilense | 1 | SOLCI003998300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007624 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24641_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2488 |
| Zosteraceae | Zostera marina | 3 | Zosma03g06040.v3.1, Zosma1151g00020.v3.1 ... |