Basic Information
Locus ID:
Ag2G01655
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the peroxisomal membrane protein PXMP2 4 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 149421654 | 149422212 | + | Ag2G01655 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.92 | 9,046.09 Da | 60.86 | 55.43 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42770.1 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein. | 0 |
| RefSeq | XP_017249595.1 | PREDICTED: protein Mpv17 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5C7HDE1 | Protein Mpv17 OS=Acer yangbiense OX=1000413 GN=EZV62_020260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.983732 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.145827 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.344966 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.407575 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.915158 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.492928 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.086762 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.068501 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.585157 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.245853 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.068378 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.438925 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.509453 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.882303 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.305196 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.605139 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.063045 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.501968 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 33.13665 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.602591 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 41.447815 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.048874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.763521 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.050264 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.488775 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.02129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 35.709908 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 47.092873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 37.20565 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 41.469395 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 58.190632 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 54.736847 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 50.071651 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.510324 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.154644 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 32.617809 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 29.581242 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 31.122967 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 41.613056 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 41.510262 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 43.971119 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.039907 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.124372 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 58.525848 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 51.282814 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.129021 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 36.215393 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.839748 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.02491 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.93587 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21317 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011705 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g208970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11986, Sbi_jg46915 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21203 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009544 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80394, Sgl82855 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016504, gene:ENSEOMG00000039010 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0009760, CQ.Regalona.r1.9BG0012960 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30089040 |
| Apiaceae | Apium graveolens | 1 | Ag2G01655 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708971 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.959.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G42770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017191m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g003260.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2687 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2784 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04350 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0197s00004.v1.0, Dusal.2223s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10247, nbisL1-mrna-6785 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1374 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004650 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20096, Lb3G20098 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3066, BH02.3152, CH02.3372 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0032050, gene-QOZ80_1BG0082260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0286710.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055434 |
| Poaceae | Oryza coarctata | 2 | Oco01G019920, Oco02G019850 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g53060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G265200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602125 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G010500, Chr03G007200, Chr03G015470, Chr05G022900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G463600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG041720, gene_TRIDC3BG047080 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G281800.1, TraesCS3B02G315500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb361970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12811, nbis-gene-26379 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11067, Zma_g8583 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1035, evm.TU.LG11.227 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1280 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16680 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11173 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.751 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013000 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9792 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19975 |
| Salicaceae | Populus euphratica | 1 | populus_peu21996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616714 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026595 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5408_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1917 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25850.v3.1 |