Basic Information
Locus ID:
Ag2G01648
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 145857434 | 145871953 | + | Ag2G01648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 63,249.36 Da | 30.98 | 80.87 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 404 | 489 | 0.00657113 | - |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 284 | 370 | 1.2E-17 | IPR001678 |
| Pfam | PF01472 | PUA domain | 154 | 192 | 1.7E-6 | IPR002478 |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 420 | 516 | 2.6E-19 | IPR001678 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 40 | 568 | 6.73E-43 | IPR029063 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 151 | 257 | 4.79E-10 | IPR015947 |
| Gene3D | G3DSA:2.30.130.10 | PUA domain | 143 | 211 | 1.7E-7 | IPR036974 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 235 | 569 | 1.4E-62 | - |
| ProSiteProfiles | PS51686 | SAM-dependent MTase RsmB/NOP-type domain profile. | 205 | 571 | 37.233276 | IPR001678 |
| ProSiteProfiles | PS50890 | PUA domain profile. | 152 | 259 | 13.027093 | - |
| ProSitePatterns | PS01153 | NOL1/NOP2/sun family signature. | 434 | 445 | - | IPR018314 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 483 | 499 | 3.7E-11 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 295 | 305 | 3.7E-11 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 359 | 371 | 3.7E-11 | IPR023267 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06560.1 | NOL1/NOP2/sun family protein. | 0 |
| RefSeq | XP_017252932.1 | PREDICTED: putative methyltransferase NSUN6 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q84MA1 | rRNA (cytosine-C(5))-methyltransferase NOP2C OS=Arabidopsis thaliana OX=3702 GN=NOP2C PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XXI3 | SAM_MT_RSMB_NOP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016942 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.615411 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.558947 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.869015 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.235672 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.306556 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.211481 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.442247 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.918587 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.631659 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.148952 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.284419 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.753297 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.548837 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.313802 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.270864 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.211009 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.741622 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.660401 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.109324 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.721984 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.961595 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.13779 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.278155 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.002433 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.524719 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.759905 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.00247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.069719 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.243456 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.399697 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.840081 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.859329 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.298566 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.363455 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.129885 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.589058 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.629743 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.698067 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.216861 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.166978 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.112707 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.714763 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.835509 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.174655 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.057 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.816651 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.04719 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.550646 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.224048 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.76743 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17866 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034686 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030160 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg22232 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16159 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008761 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62704, Sgl67324, Sgl67538, Sgl67542 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016961, gene:ENSEOMG00000023418 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0021010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013290 |
| Apiaceae | Apium graveolens | 1 | Ag2G01648 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G005940, COCNU_06G005950, COCNU_06G005960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707377 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1716.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri5G11115, FtriNA29572 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G06560.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007146m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g05320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g001920.2N, BniB06g044070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2190 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2269 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g10150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0036s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1249 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001395 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1302, BH08.1289, CH08.1397 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0627780, gene-QOZ80_8BG0656340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0719480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032131 |
| Poaceae | Oryza coarctata | 2 | Oco15G007080, Oco16G006830 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g27824.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G119600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703986, Pt_Chr0705444 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G007720, Chr29G007100 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G637100, Tel7E01G637200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG052450, gene_TRIDC7BG044900 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G375500.1, TraesCS7B02G277100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb170650_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43220 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22870 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2516, evm.TU.LG17.1559 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g00150, gene.Posoc04g08660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1248 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11718 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8029 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11204 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.728 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9816 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19939 |
| Salicaceae | Populus euphratica | 1 | populus_peu14994 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616621 |
| Solanaceae | Solanum chilense | 1 | SOLCI006140700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026500 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7321 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1533 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00610.v3.1 |