halophFGD

Basic Information

Locus ID: Ag2G01625

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DNA recombination

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	141715037	141715969	+	Ag2G01625

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.95	23,381.44 Da	32.95	91.08	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd04476	RPA1_DBD_C	23	136	9.44128E-25	IPR013955
Pfam	PF08646	Replication factor-A C terminal domain	25	140	7.3E-13	IPR013955
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	21	143	7.37E-23	IPR012340
Gene3D	G3DSA:2.40.50.140	-	6	173	7.3E-30	-
MobiDBLite	mobidb-lite	consensus disorder prediction	172	192	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	172	195	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017217020.1	PREDICTED: replication protein A 70 kDa DNA-binding subunit C-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A6L5B9L1	Rep_fac-A_C domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_008303 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.293469	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.126421	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.377895	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.115205	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.760494	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.272088	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.374057	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	4.11869	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	4.213453	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.362233	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.557745	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.14991	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.095666	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.237604	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.679676	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.721295	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.63785	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.51071	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.585187	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.697886	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.647487	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.827275	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.787955	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.258425	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.051617	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.428337	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.568369		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.001898		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.039444		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.546032		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.819422		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.72642		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.138333		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.522285	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.583744	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.082741	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.958813	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.87841	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.533074	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.821832	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	43.718594	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	41.554363	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11242, gene_19988, gene_9588
Amaranthaceae	Atriplex hortensis	13	Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ... Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ... Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae	Salicornia europaea	16	Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ... Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00024462
Amaranthaceae	Suaeda glauca	10	Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ... Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ... gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae	Apium graveolens	27	Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ... Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae	Cocos nucifera	2	COCNU_13G005920, scaffold010294G000060
Poaceae	Echinochloa crus-galli	7	AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ... CH01.2160, CH02.811
Poaceae	Oryza coarctata	1	Oco15G006230
Poaceae	Oryza sativa	8	LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ... LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G191500, gene-BS78_05G005400 ... gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ... Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae	Sporobolus alterniflorus	2	Chr19G015510, Chr27G003730
Poaceae	Thinopyrum elongatum	10	Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ... Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae	Triticum dicoccoides	6	gene_TRIDC1BG023090, gene_TRIDC2AG046570 ... gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae	Lycium barbarum	3	gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae	Solanum chilense	7	SOLCI000818800, SOLCI000928800, SOLCI004930500 ... SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae	Solanum pennellii	6	gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ... gene-LOC107020428, gene-LOC107024868, gene-LOC114077490