Basic Information
Locus ID:
Ag2G01604
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Sucrose-phosphatase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 137025995 | 137030972 | + | Ag2G01604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 47,891.04 Da | 34.10 | 86.52 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02605 | HAD_SPP | 11 | 259 | 1.35196E-97 | - |
| Pfam | PF08472 | Sucrose-6-phosphate phosphohydrolase C-terminal | 262 | 394 | 1.7E-56 | IPR013679 |
| Pfam | PF05116 | Sucrose-6F-phosphate phosphohydrolase | 9 | 261 | 9.0E-98 | IPR006380 |
| SUPERFAMILY | SSF54427 | NTF2-like | 282 | 412 | 1.31E-26 | IPR032710 |
| SUPERFAMILY | SSF56784 | HAD-like | 10 | 230 | 7.7E-27 | IPR036412 |
| Gene3D | G3DSA:3.10.450.50 | - | 283 | 412 | 1.8E-21 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 11 | 258 | 2.3E-78 | IPR023214 |
| Gene3D | G3DSA:3.90.1070.10 | - | 102 | 172 | 2.3E-78 | - |
| TIGRFAM | TIGR01485 | SPP_plant-cyano: sucrose phosphatase | 9 | 262 | 9.0E-114 | IPR012847 |
| TIGRFAM | TIGR01482 | SPP-subfamily: sucrose-phosphate phosphatase subfamily | 12 | 257 | 1.5E-69 | - |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 11 | 219 | 1.5E-37 | IPR006379 |
| SFLD | SFLDG01141 | C2.B.1: Sucrose Phosphatase Like | 1 | 262 | 0.0 | - |
| SFLD | SFLDF00043 | sucrose-phosphatase | 1 | 262 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35840.1 | Sucrose-6F-phosphate phosphohydrolase family protein. | 0 |
| RefSeq | XP_017253835.1 | PREDICTED: sucrose-phosphatase 1-like [Daucus carota subsp. sativus] | 0 |
| Q5IH14 | Sucrose-phosphatase 1 OS=Nicotiana tabacum OX=4097 GN=SPP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XWJ1 | Sucrose-phosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016909 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 45.463818 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 38.562706 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 37.102299 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.336002 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 39.442844 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.739908 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 28.165308 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.858316 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.527447 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.134392 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 56.094406 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 54.411709 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 58.352299 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 55.419727 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 32.404091 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.296293 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 47.976151 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 60.832371 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 62.841702 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 49.274998 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 53.002953 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 84.111748 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 83.721405 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 90.201424 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 76.674904 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 94.522224 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 68.267113 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 77.452553 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 76.520042 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 29.970903 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 45.385895 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 32.61771 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.9226 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 38.713284 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.94084 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 21.068542 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.990633 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 28.879221 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 44.694363 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 51.85006 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 86.658417 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.051981 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 31.758112 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 54.718548 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 57.234299 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.904041 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 56.27179 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 79.323692 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 90.801537 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 76.605019 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15170, jg31894, jg3683 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11368, gene_2328 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003047, Ah006581 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109020 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg15809, Sbi_jg36273, Sbi_jg56608 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13808, Seu_jg4334 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00027527, GOSA_00028173 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25353, Sgl30528, Sgl51357, Sgl56605 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005562, gene:ENSEOMG00000010287 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0013220, CQ.Regalona.r1.4BG0015550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30169090, pistato.v30277000 |
| Apiaceae | Apium graveolens | 3 | Ag2G01604, Ag3G00687, Ag6G01908 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000090, COCNU_12G001670 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707401, gene-LOC103719698 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2610.V1.1, AsparagusV1_08.3108.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G03520, Ftri17G20005 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G51420.1, AT2G35840.1, AT3G52340.1, AT3G54270.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10010361m.g.v1.0, Thhalv10010402m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g38100.v2.2, Sp4g18100.v2.2, Sp5g08120.v2.2 ... |
| Brassicaceae | Brassica nigra | 10 | BniB01g008610.2N, BniB01g008650.2N, BniB03g063780.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1247, Ceq08G1608 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1409, Cgl08G1638 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g11890, gene.Cymno06g03370 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0161s00006.v1.0, Dusal.0406s00015.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12622 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1860, evm.TU.LG02.1390 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003640 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23394, Lb6G31526 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.1823, AH03.1536, AH05.768, AH05.769, AH07.3397 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0017250, gene-QOZ80_1BG0066280 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0020190.1, HORVU.MOREX.r3.5HG0420010.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_009471, gene-QYE76_042854, gene-QYE76_061283 ... |
| Poaceae | Oryza coarctata | 5 | Oco02G010930, Oco03G002330, Oco04G002230, Oco09G002160 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g27880.1, LOC_Os02g05030.1, LOC_Os05g05270.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G385000, gene-BS78_09G041400 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303724 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G012540, Chr02G018730, Chr05G014950, Chr05G014980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G173800, Tel5E01G007400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG012620, gene_TRIDC1BG015480 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G088600.1, TraesCS1B02G107600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb351280_P003, Zm00001eb417940_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36695, nbis-gene-52842 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25019, Zma_g26413 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1371, evm.TU.LG11.716, evm.TU.LG18.488 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21870 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1085, evm.TU.Scaffold_2_RagTag.1084 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4104, nbisL1-mrna-6523 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14682 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10184 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.597, evm.TU.utg000016l.859 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005178, Maker00016446 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11043, nbisL1-mrna-12506, nbisL1-mrna-12507 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13293, nbisL1-mrna-5673, nbisL1-mrna-5674 |
| Salicaceae | Populus euphratica | 3 | populus_peu06028, populus_peu12379, populus_peu26000 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607251, gene-LOC132625962 |
| Solanaceae | Solanum chilense | 2 | SOLCI000200100, SOLCI000938400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002529, gene-LOC107009907 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1812 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2787 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11450.v3.1 |