halophFGD

Basic Information

Locus ID: Ag2G01591

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	134840768	134845843	+	Ag2G01591

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.89	17,346.37 Da	69.63	74.47	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	7	145	5.58688E-74	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	8	144	9.1E-52	IPR000608
SUPERFAMILY	SSF54495	UBC-like	1	150	1.84E-62	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	1	148	1.6E-66	IPR016135
SMART	SM00212	ubc_7	7	150	2.4E-68	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	4	150	59.673836	IPR000608
ProSitePatterns	PS00183	Ubiquitin-conjugating (UBC) active site signature.	77	92	-	IPR023313

KEGG Pathway

KO Term:

K10573 (ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G02760.1	ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
RefSeq	XP_008385275.1	ubiquitin-conjugating enzyme E2 2 [Malus domestica]
Swiss-Prot	P25866	Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1
TrEMBL	A0A8J6BZW3	UBC core domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0013g33984 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	54.729824	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	65.960518	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	68.518013	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	69.026054	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	63.95417	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	98.679199	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	76.086723	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	81.846008	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	121.921562	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	124.734535	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	119.955826	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	132.487183	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	128.31987	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	120.969666	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	100.973312	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	93.218697	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	103.30336	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	101.222374	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	97.085022	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	96.495773	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	116.359451	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	122.895432	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	149.086014	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	127.112137	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	133.980164	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	94.645439	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	106.290115	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	111.187134	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	108.154366	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	161.911285		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	161.607864		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	176.346741		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	301.318115		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	226.690384		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	243.044113		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	250.838135		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	229.572769		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	224.9711		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	84.18515	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	67.040962	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	49.939583	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	359.223267	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	404.278381	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	609.939697	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	565.638367	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	374.390869	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	373.916718	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	151.286392	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	195.125595	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	190.045471	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13099, jg18627, jg25771
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18215, gene_19609
Amaranthaceae	Atriplex hortensis	2	Ah000942, Ah014063
Amaranthaceae	Beta vulgaris	1	BVRB_6g154480
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg31182, Sbi_jg43139, Sbi_jg45738
Amaranthaceae	Salicornia europaea	2	Seu_jg11587, Seu_jg25713
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004584, GOSA_00026535
Amaranthaceae	Suaeda glauca	4	Sgl54647, Sgl54648, Sgl59986, Sgl59987
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002648, gene:ENSEOMG00000006960 ... gene:ENSEOMG00000015673, gene:ENSEOMG00000024786, gene:ENSEOMG00000025334, gene:ENSEOMG00000025569
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5BG0022550, CQ.Regalona.r1.6AG0001650 ... CQ.Regalona.r1.6BG0001760
Anacardiaceae	Pistacia vera	3	pistato.v30093150, pistato.v30137570, pistato.v30137580
Apiaceae	Apium graveolens	4	Ag2G01591, Ag4G00862, Ag8G01405, Ag8G01407
Arecaceae	Cocos nucifera	2	COCNU_06G000040, COCNU_14G006340
Arecaceae	Phoenix dactylifera	4	gene-LOC103696455, gene-LOC103704901, gene-LOC103709769 ... gene-LOC103719920
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.2310.V1.1, AsparagusV1_03.474.V1.1 ... AsparagusV1_05.1693.V1.1, AsparagusV1_06.811.V1.1, AsparagusV1_07.3308.V1.1, AsparagusV1_08.3298.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G33782, Ftri1G08110, Ftri6G30319
Brassicaceae	Arabidopsis thaliana	3	AT1G14400.1, AT2G02760.1, AT5G62540.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005070m.g.v1.0, Thhalv10005078m.g.v1.0 ... Thhalv10008589m.g.v1.0, Thhalv10019281m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g12770.v2.2, Sp2g13870.v2.2, Sp5g24910.v2.2
Brassicaceae	Brassica nigra	10	BniB02g009430.2N, BniB02g065560.2N, BniB03g005970.2N ... BniB03g005990.2N, BniB03g047480.2N, BniB04g002170.2N, BniB04g008940.2N, BniB04g014350.2N, BniB06g010810.2N, BniB06g039530.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1808, Ceq07G0059
Casuarinaceae	Casuarina glauca	1	Cgl04G1985
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g00460, gene.Cymno01g00470
Dunaliellaceae	Dunaliella salina	1	Dusal.0477s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g15650, gene.Thate02g29010, gene.Thate08g10390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11184, nbisL1-mrna-7969
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2006, evm.TU.LG03.205, evm.TU.LG10.903
Plantaginaceae	Plantago ovata	2	Pov_00023468, Pov_00031971
Plumbaginaceae	Limonium bicolor	2	Lb0G36725, Lb2G13278
Poaceae	Echinochloa crus-galli	9	AH02.374, AH03.327, BH02.401, BH03.3919, BH03.406, CH01.432 ... CH02.445, CH03.476, CH05.260
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0012530, gene-QOZ80_1BG0061180 ... gene-QOZ80_3AG0213050, gene-QOZ80_3BG0258200, gene-QOZ80_7AG0556890, gene-QOZ80_7BG0587830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0029270.1, HORVU.MOREX.r3.2HG0149130.1 ... HORVU.MOREX.r3.3HG0237640.1, HORVU.MOREX.r3.5HG0517500.1
Poaceae	Lolium multiflorum	4	gene-QYE76_010323, gene-QYE76_042648, gene-QYE76_050807 ... gene-QYE76_061431
Poaceae	Oryza coarctata	6	Oco05G025740, Oco06G026610, Oco09G003750, Oco10G003700 ... Oco13G002100, Oco14G002200
Poaceae	Oryza sativa	3	LOC_Os03g57790.1, LOC_Os05g08960.1, LOC_Os07g07240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G054300, gene-BS78_02G044400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105336, Pt_Chr0200083, Pt_Chr0303605, Pt_Chr0501608
Poaceae	Sporobolus alterniflorus	8	Chr01G003090, Chr03G005990, Chr05G011310, Chr0G004880 ... Chr12G034960, Chr19G017520, Chr24G000840, Chr28G001440
Poaceae	Thinopyrum elongatum	3	Tel2E01G455700, Tel3E01G193900, Tel5E01G671700
Poaceae	Triticum dicoccoides	7	gene_TRIDC1BG021200, gene_TRIDC2AG034200 ... gene_TRIDC2BG038730, gene_TRIDC3AG013910, gene_TRIDC3BG018390, gene_TRIDC5AG061990, gene_TRIDC5BG066150
Poaceae	Triticum aestivum	11	TraesCS1B02G140300.1, TraesCS1D02G121800.1 ... TraesCS2A02G247700.1, TraesCS2B02G270000.2, TraesCS2D02G248000.1, TraesCS3A02G112600.1, TraesCS3B02G131500.2, TraesCS3D02G114600.3, TraesCS5A02G429000.1, TraesCS5B02G431100.1, TraesCS5D02G437100.1
Poaceae	Zea mays	5	Zm00001eb060380_P001, Zm00001eb117140_P001 ... Zm00001eb213140_P002, Zm00001eb269840_P003, Zm00001eb300890_P001
Poaceae	Zoysia japonica	4	nbis-gene-16437, nbis-gene-26905, nbis-gene-35715 ... nbis-gene-6759
Poaceae	Zoysia macrostachya	4	Zma_g10091, Zma_g2599, Zma_g4781, Zma_g6035
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.830, evm.TU.LG03.280, evm.TU.LG09.2005 ... evm.TU.LG12.1426, evm.TU.LG13.333, evm.TU.LG21.39
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g01120
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.923, evm.TU.Scaffold_15_RagTag.659 ... evm.TU.Scaffold_17_RagTag.336
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14600, nbisL1-mrna-22990, nbisL1-mrna-28816
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1497, nbisL1-mrna-15565, nbisL1-mrna-316
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14860, nbisL1-mrna-15721, nbisL1-mrna-1787
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.343, evm.TU.utg000008l.356 ... evm.TU.utg000010l.45, evm.TU.utg000013l.233
Rhizophoraceae	Kandelia obovata	4	Maker00000829, Maker00002658, Maker00006743, Maker00008626
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11319, nbisL1-mrna-14548, nbisL1-mrna-7143 ... nbisL1-mrna-816
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1532, nbisL1-mrna-15771, nbisL1-mrna-17839 ... nbisL1-mrna-8564
Salicaceae	Populus euphratica	4	populus_peu02348, populus_peu16124, populus_peu19348 ... populus_peu28520
Solanaceae	Lycium barbarum	4	gene-LOC132600798, gene-LOC132621219, gene-LOC132623275 ... gene-LOC132632666
Solanaceae	Solanum chilense	2	SOLCI000207800, SOLCI000466400
Solanaceae	Solanum pennellii	4	gene-LOC107008696, gene-LOC107011696, gene-LOC107014753 ... gene-LOC107023242
Tamaricaceae	Reaumuria soongarica	2	STRG.14046_chr05_+, gene_2081
Tamaricaceae	Tamarix chinensis	2	TC01G3273, TC03G0654
Zosteraceae	Zostera marina	2	Zosma06g29780.v3.1, Zosma06g29820.v3.1