Basic Information
Locus ID:
Ag2G01588
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
EGY1
Description:
zinc metalloprotease EGY1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 134226920 | 134228199 | + | Ag2G01588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 16,395.96 Da | 34.66 | 69.86 | -0.45 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35220.1 | Peptidase M50 family protein. Membrane-associated and ATP-independent metalloprotease; EGY1 protein contains eight trans-membrane domains at its C-terminus, and carries out beta-casein degradation in an ATP-independent manner. EGY1 is required for development of both thylakoid grana and a well-organized lamellae system in chloroplast. Additionally, EGY1 is required for the accumulation of chlorophyll and chlorophyll a/b binding (CAB) proteins (both PS I and PS II) in chloroplast membranes, and for grana formation and normal chloroplast development. Loss of EGY1 function also has an effect on endodermal plastid biogenesis. | 0 |
| RefSeq | XP_017246848.1 | PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q949Y5 | Probable zinc metalloprotease EGY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EGY1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165YR99 | Zinc metalloprotease EGY1, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013485 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.994343 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.946921 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.736799 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.241426 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.175012 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.559898 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.755564 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.257709 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.431904 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.871595 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.244159 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.442027 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.377984 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.825238 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.325415 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.372919 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.812687 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.405917 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.392995 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.156088 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.507128 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.274911 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.078338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.307973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.17476 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.917062 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.550858 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.860001 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.438449 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.384838 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.674634 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.770898 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.832919 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.771026 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.843322 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.248919 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.541112 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.068697 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.112402 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.020952 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.255102 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.615559 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.552485 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.101915 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.685597 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.559909 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.877328 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.977345 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15735 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2365 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002795 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12951, Sbi_jg52917 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8941 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026032 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31026, Sgl32331, Sgl36395, Sgl36397 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006957, gene:ENSEOMG00000021080 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0012190, CQ.Regalona.r1.5BG0012730 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30093180 |
| Apiaceae | Apium graveolens | 3 | Ag2G01588, Ag2G01589, Ag3G00730 |
| Arecaceae | Cocos nucifera | 1 | scaffold008709G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708305 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3305.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G24794, Ftri2G00785 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003446m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g060950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1441 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1472 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g13810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0788s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g40140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2002 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000367 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G25338, Lb4G25895 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.167, BH03.3918, CH01.433 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213060, gene-QOZ80_3BG0258210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0517590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061439 |
| Poaceae | Oryza coarctata | 2 | Oco05G025750, Oco06G026620 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g57840.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G054400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105337 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G003100, Chr04G030290, Chr12G034970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G672000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG062020, gene_TRIDC5BG066200 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G429300.1, TraesCS5B02G431300.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb060350_P002, Zm00001eb213150_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16436 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2600 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.470, evm.TU.LG26.566 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1803 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3001, nbisL1-mrna-3167 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-360 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13904 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.217 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005057 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12819 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16382 |
| Salicaceae | Populus euphratica | 2 | populus_peu16127, populus_peu16128 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607277 |
| Solanaceae | Solanum chilense | 1 | SOLCI004273600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002481 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13255 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G3058 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06370.v3.1 |