Basic Information
Locus ID:
Ag2G01558
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 128951324 | 128959921 | + | Ag2G01558 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 100,649.51 Da | 31.40 | 103.55 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 70 | 6.3E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 585 | 845 | 2.3E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 386 | 445 | 1.1E-10 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 561 | 848 | 5.66E-75 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 79 | 465 | 1.18E-67 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 658 | 866 | 3.3E-64 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 218 | 504 | 3.8E-92 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 552 | 657 | 2.5E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 146 | 217 | 3.6E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 145 | 2.0E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 288 | 312 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 240 | 264 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 169 | 193 | 160.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 582 | 852 | 8.6E-26 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 121 | 145 | 68.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 432 | 17.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 123 | 145 | 7.011191 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 582 | 852 | 34.322311 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 588 | 611 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 703 | 715 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26330.1 | Leucine-rich receptor-like protein kinase family protein. Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. | 0 |
| RefSeq | XP_017253435.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Daucus carota subsp. sativus] | 0 |
| Q42371 | LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana OX=3702 GN=ERECTA PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J0GXY5 | Leucine-rich receptor-like protein kinase family protein OS=Actinidia rufa OX=165716 GN=Acr_24g0017780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.84541 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.602147 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.966133 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.005017 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.772285 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.336701 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.831862 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.94557 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 102.729866 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 105.006363 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 112.824547 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 98.034058 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 68.008156 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.360054 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.727029 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.602901 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.172698 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.429871 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.670815 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.808511 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.552488 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.143541 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.873156 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.732489 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.72345 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.485146 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.46844 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.066472 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.563587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.538725 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.529587 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.345865 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.117782 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.530128 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.498826 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.227821 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.121821 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.438576 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 21.624718 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.823633 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.982315 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.29777 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.188793 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.247543 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.926988 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.18474 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.659459 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.50309 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 36.171093 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.413574 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14068, jg23990, jg4602, jg7950, jg7951 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8054 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034440 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20415, Sbi_jg23364 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17147 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009075 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63595, Sgl68082 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016861, gene:ENSEOMG00000022156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013550, CQ.Regalona.r1.2BG0015610 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30181640, pistato.v30260850 |
| Apiaceae | Apium graveolens | 4 | Ag2G01558, Ag2G01938, Ag7G00418, Ag9G02574 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G004100, COCNU_08G006160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704912, gene-LOC103721746 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1302.V1.1, AsparagusV1_03.1303.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G21699, Ftri1G09595, Ftri3G24629 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G26330.1, AT5G07180.1, AT5G62230.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001898m.g.v1.0, Thhalv10003615m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g25430.v2.2, Sp4g06960.v2.2, Sp6g35720.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g024810.2N, BniB02g053710.2N, BniB06g010510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2029, Ceq03G2152 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2101, Cgl03G2294 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g01110, gene.Cymno18g04630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g05590, gene.Thate05g25620 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2262, evm.TU.LG07.694 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013390, Pov_00040854 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G04460, Lb1G07869, Lb2G12716, Lb4G25723 |
| Poaceae | Echinochloa crus-galli | 9 | AH06.497, AH06.682, AH07.3673, BH06.187, BH06.756, BH07.3483 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0147880, gene-QOZ80_2BG0203290 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0620170.1, HORVU.MOREX.r3.7HG0644570.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_025829, gene-QYE76_027423, gene-QYE76_027630 |
| Poaceae | Oryza coarctata | 6 | Oco03G023250, Oco04G023830, Oco11G001430, Oco11G004670 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g53720.1, LOC_Os06g03970.1, LOC_Os06g10230.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G295600, gene-BS78_10G022700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0203053, Pt_Chr0304993, Pt_Chr0405065, Pt_Ctg00141 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000840, Chr11G020700, Chr11G023880, Chr15G002120 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel6E01G593400, Tel7E01G139500, Tel7E01G326500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG062720, gene_TRIDC6AG050310 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4A02G422700.1, TraesCS6A02G336300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb256740_P004, Zm00001eb278640_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-34988, nbis-gene-40011, nbis-gene-40299 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g17273, Zma_g29034, Zma_g29298, Zma_g31281, Zma_g31537 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.846, evm.TU.LG15.88 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g02910, gene.Posoc08g04520 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.654, evm.TU.Scaffold_4_RagTag.1093 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12606, nbisL1-mrna-25861 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15597, nbisL1-mrna-18568, nbisL1-mrna-7054 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-12871, nbisL1-mrna-12872, nbisL1-mrna-1338 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.700, evm.TU.utg000010l.326 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000131, Maker00008771, Maker00015066 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-18292, nbisL1-mrna-2052, nbisL1-mrna-540 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-8056, nbisL1-mrna-8944, nbisL1-mrna-9406 |
| Salicaceae | Populus euphratica | 5 | populus_peu04947, populus_peu04948, populus_peu29180 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631775, gene-LOC132635992 |
| Solanaceae | Solanum chilense | 2 | SOLCI004318000, SOLCI006698600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014834, gene-LOC107028570 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13363, gene_5183 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1946, TC11G1493 |
| Zosteraceae | Zostera marina | 4 | Zosma01g09160.v3.1, Zosma02g09020.v3.1, Zosma03g25670.v3.1 ... |