halophFGD

Basic Information

Locus ID: Ag2G01505

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the RecA family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	121789356	121795009	-	Ag2G01505

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.79	44,179.98 Da	34.02	95.82	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00154	recA bacterial DNA recombination protein	76	339	8.5E-93	IPR013765
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	77	339	2.23E-45	IPR027417
Gene3D	G3DSA:3.40.50.300	-	102	400	1.1E-96	IPR027417
SMART	SM00382	AAA_5	126	286	0.0077	IPR003593
TIGRFAM	TIGR02012	tigrfam_recA: protein RecA	72	394	1.9E-106	IPR013765
ProSiteProfiles	PS50162	RecA family profile 1.	104	263	29.07098	IPR020588
ProSiteProfiles	PS50163	RecA family profile 2.	270	344	22.444134	IPR020587
PRINTS	PR00142	RecA protein signature	315	344	1.1E-62	IPR013765
PRINTS	PR00142	RecA protein signature	282	310	1.1E-62	IPR013765
PRINTS	PR00142	RecA protein signature	162	191	1.1E-62	IPR013765
PRINTS	PR00142	RecA protein signature	368	385	1.1E-62	IPR013765
PRINTS	PR00142	RecA protein signature	234	263	1.1E-62	IPR013765
PRINTS	PR00142	RecA protein signature	196	225	1.1E-62	IPR013765

Gene Ontology

Biological Process:

GO:0006259 (DNA metabolic process) GO:0006281 (DNA repair)

Molecular Function:

GO:0003677 (DNA binding) GO:0003697 (single-stranded DNA binding) GO:0005524 (ATP binding) GO:0008094 (ATP-dependent activity, acting on DNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G10140.1	RECA homolog 3.
RefSeq	XP_017249889.1	PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Daucus carota subsp. sativus]
Swiss-Prot	Q8RY99	DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1
TrEMBL	A0A5B6YIK0	DNA repair protein recA homolog 2, mitochondrial OS=Davidia involucrata OX=16924 GN=Din_001108 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.624583	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	8.681403	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	10.470799	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.898681	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.468082	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.59983	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.743103	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	11.501513	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	16.080662	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.971693	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.568918	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.644651	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.93646	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.478498	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.117525	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.996354	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.398798	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.094935	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	7.202152	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.28419	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.63513	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.727859	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.811075	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	6.242974	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.971989	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	7.540258	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.109604	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.567121	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.586628	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.443983		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.480506		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.848845		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	11.783618		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.118064		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	12.072083		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	7.270539		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.942979		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.528974		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.907195	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.463702	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.777327	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	8.925889	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.41366	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	19.926764	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.735201	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.450253	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	13.171393	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.278708	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.765019	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.407626	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15413, jg20582, jg32367, jg32916, jg4300
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11024, gene_4617, gene_7669
Amaranthaceae	Atriplex hortensis	3	Ah007405, Ah015172, Ah022007
Amaranthaceae	Beta vulgaris	1	BVRB_3g062120
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18396, Sbi_jg18962, Sbi_jg36798, Sbi_jg37416 ... Sbi_jg59417, Sbi_jg63229
Amaranthaceae	Salicornia europaea	3	Seu_jg23662, Seu_jg4718, Seu_jg5257
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00014743, GOSA_00020746, GOSA_00024178
Amaranthaceae	Suaeda glauca	7	Sgl02796, Sgl07923, Sgl22464, Sgl27680, Sgl41785, Sgl41786 ... Sgl46587
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000009222, gene:ENSEOMG00000012094 ... gene:ENSEOMG00000026919, gene:ENSEOMG00000030614, gene:ENSEOMG00000031839, gene:ENSEOMG00000043365, gene:ENSEOMG00000044628, gene:ENSEOMG00000046222
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0021890, CQ.Regalona.r1.4AG0015950 ... CQ.Regalona.r1.4BG0014080, CQ.Regalona.r1.8AG0014760, CQ.Regalona.r1.8BG0015980
Anacardiaceae	Pistacia vera	3	pistato.v30164210, pistato.v30185770, pistato.v30259480
Apiaceae	Apium graveolens	4	Ag10G01443, Ag10G02923, Ag2G01505, Ag5G01569
Arecaceae	Cocos nucifera	3	COCNU_04G008610, COCNU_09G001050, COCNU_14G009260
Arecaceae	Phoenix dactylifera	3	gene-LOC103696257, gene-LOC103714685, gene-LOC103723937
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1944.V1.1, AsparagusV1_05.87.V1.1 ... AsparagusV1_07.3483.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G25414, Ftri15G00504, Ftri15G06633, Ftri3G03501
Brassicaceae	Arabidopsis thaliana	4	AT1G79050.1, AT2G19490.1, AT3G10140.1, AT3G32920.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10018594m.g.v1.0, Thhalv10020901m.g.v1.0 ... Thhalv10022701m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08420.v2.2, Sp3g32870.v2.2, Sp5g34100.v2.2
Brassicaceae	Brassica nigra	5	BniB02g015630.2N, BniB03g023610.2N, BniB03g068780.2N ... BniB05g074790.2N, BniB06g050620.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1598, Ceq04G1001, Ceq06G0847
Casuarinaceae	Casuarina glauca	3	Cgl01G1764, Cgl04G1132, Cgl06G0872
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g04220, gene.Cymno11g11360, gene.Cymno14g10860
Dunaliellaceae	Dunaliella salina	1	Dusal.0151s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g01200, gene.Thate05g03390, gene.Thate09g10070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9314
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2520, evm.TU.LG05.1046, evm.TU.LG07.1249
Plantaginaceae	Plantago ovata	3	Pov_00006763, Pov_00038048, Pov_00039633
Plumbaginaceae	Limonium bicolor	4	Lb2G11606, Lb3G16114, Lb4G23234, Lb4G24730
Poaceae	Echinochloa crus-galli	11	AH01.1240, AH02.4208, AH02.4481, BH01.1486, BH02.4233 ... BH02.4533, BH04.1089, CH02.4259, CH02.4584, CH04.1271, CH06.2641
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0043280, gene-QOZ80_1BG0093200 ... gene-QOZ80_3AG0224540, gene-QOZ80_3BG0269660
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0305240.1, HORVU.MOREX.r3.3HG0319320.1 ... HORVU.MOREX.r3.5HG0508640.1
Poaceae	Lolium multiflorum	3	gene-QYE76_057130, gene-QYE76_057959, gene-QYE76_063512
Poaceae	Oryza coarctata	6	Oco01G027500, Oco02G028580, Oco02G030920, Oco05G018750 ... Oco06G019540, Oco22G005490
Poaceae	Oryza sativa	4	LOC_Os01g67510.1, LOC_Os01g71690.2, LOC_Os03g43850.1 ... LOC_Os11g19720.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G145900, gene-BS78_03G370100, gene-BS78_K141300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104476, Pt_Chr0207353, Pt_Chr0600272, Pt_Chr0600304
Poaceae	Sporobolus alterniflorus	10	Chr01G009510, Chr02G001220, Chr03G022070, Chr05G031050 ... Chr05G033430, Chr07G023590, Chr08G020000, Chr0G024230, Chr0G031560, Chr12G027490
Poaceae	Thinopyrum elongatum	4	Tel3E01G625800, Tel3E01G777600, Tel5E01G598600 ... Tel6E01G748200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG056180, gene_TRIDC3AG068210 ... gene_TRIDC3BG062860, gene_TRIDC3BG077200, gene_TRIDC5AG055060, gene_TRIDC5BG059060
Poaceae	Triticum aestivum	9	TraesCS3A02G394500.1, TraesCS3A02G484100.1 ... TraesCS3B02G426500.1, TraesCS3B02G530900.1, TraesCS3D02G388300.1, TraesCS3D02G479500.1, TraesCS5A02G376100.1, TraesCS5B02G379700.1, TraesCS5D02G386100.1
Poaceae	Zea mays	4	Zm00001eb050740_P001, Zm00001eb141480_P006 ... Zm00001eb144420_P002, Zm00001eb365600_P001
Poaceae	Zoysia japonica	3	nbis-gene-11092, nbis-gene-20435, nbis-gene-28182
Poaceae	Zoysia macrostachya	4	Zma_g11925, Zma_g18707, Zma_g3207, Zma_g9202
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2194, evm.TU.LG07.434, evm.TU.LG08.1605 ... evm.TU.LG14.1348, evm.TU.LG15.509, evm.TU.LG22.503
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07770, gene.Posoc07g10120, gene.Posoc08g07150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.525, evm.TU.Scaffold_2_RagTag.1193 ... evm.TU.Scaffold_5_RagTag.103
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-10504, nbisL1-mrna-12996, nbisL1-mrna-3844
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12771, nbisL1-mrna-17267, nbisL1-mrna-5363
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10671, nbisL1-mrna-16913, nbisL1-mrna-18798
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000006l.61, evm.TU.utg000009l.511 ... evm.TU.utg000033l.364
Rhizophoraceae	Kandelia obovata	3	Maker00005186, Maker00013790, Maker00014801
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12413, nbisL1-mrna-4018, nbisL1-mrna-9280
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-5529, nbisL1-mrna-6917, nbisL1-mrna-8182
Salicaceae	Populus euphratica	5	populus_peu00265, populus_peu05057, populus_peu05064 ... populus_peu11925, populus_peu26079
Solanaceae	Lycium barbarum	4	gene-LOC132607484, gene-LOC132617321, gene-LOC132624595 ... gene-LOC132640056
Solanaceae	Solanum chilense	3	SOLCI000424700, SOLCI004293900, SOLCI006871600
Solanaceae	Solanum pennellii	3	gene-LOC107002771, gene-LOC107018851, gene-LOC107025835
Tamaricaceae	Reaumuria soongarica	3	STRG.18129_chr09_-, gene_5108, gene_6052
Tamaricaceae	Tamarix chinensis	3	TC02G3676, TC06G2513, TC12G1159
Zosteraceae	Zostera marina	4	Zosma03g15350.v3.1, Zosma03g34760.v3.1, Zosma06g02240.v3.1 ... Zosma256g00080.v3.1