halophFGD

Basic Information

Locus ID: Ag2G01473

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	115488358	115500578	-	Ag2G01473

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	119,947.47 Da	33.76	111.89	0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16702	RING_CH-C4HC3_MARCH6	35	84	2.86529E-30	-
Pfam	PF12906	RING-variant domain	36	82	1.3E-15	IPR011016
SUPERFAMILY	SSF57850	RING/U-box	30	87	6.28E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	20	94	4.6E-23	IPR013083
SMART	SM00744	ringv_2	35	83	1.7E-24	IPR011016
ProSiteProfiles	PS51292	Zinc finger RING-CH-type profile.	28	89	24.330498	IPR011016
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10661 (E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34100.2	RING/U-box superfamily protein.
RefSeq	XP_017226504.1	PREDICTED: probable E3 ubiquitin ligase SUD1 [Daucus carota subsp. sativus]
Swiss-Prot	F4JKK0	Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1
TrEMBL	A0A5B6Z6N1	Putative RING/U-box domain-containing protein isoform 1 OS=Davidia involucrata OX=16924 GN=Din_009155 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	8.797505	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.545651	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	9.732063	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.694873	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.426817	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.516813	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.521635	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	16.913147	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.710994	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.225245	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.414724	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	14.614933	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.536722	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.597214	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.143914	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.760647	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	8.920164	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.757252	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.304763	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.272755	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.400577	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	7.966459	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.026903	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.267002	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.105388	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.38444	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.150561	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.047274	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.266594	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.389863		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.437111		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.793947		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	11.952745		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.008204		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.722812		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	6.115047		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.326002		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.689922		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.286666	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.857037	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.901868	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	27.089939	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.537163	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.076092	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	22.793396	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	22.548529	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	24.34107	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.235332	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.838617	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	11.803175	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg1099, jg28660
Aizoaceae	Mesembryanthemum crystallinum	1	gene_21757
Amaranthaceae	Atriplex hortensis	1	Ah009959
Amaranthaceae	Beta vulgaris	1	BVRB_9g224330
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11147, Sbi_jg46116
Amaranthaceae	Salicornia europaea	1	Seu_jg20462
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005489
Amaranthaceae	Suaeda glauca	2	Sgl55747, Sgl60962
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000018737, gene:ENSEOMG00000037088 ... gene:ENSEOMG00000049463
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0005070, CQ.Regalona.r1.9AG0019420
Anacardiaceae	Pistacia vera	1	pistato.v30213710
Apiaceae	Apium graveolens	2	Ag2G01473, Ag9G00155
Arecaceae	Cocos nucifera	2	COCNU_11G007770, scaffold000191G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103706508, gene-LOC103711508
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3253.V1.1, AsparagusV1_Unassigned.826.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G00544, Ftri15G00836, Ftri7G33574, Ftri8G10188
Brassicaceae	Arabidopsis thaliana	1	AT4G34100.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10022448m.g.v1.0, Thhalv10024280m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp7g31810.v2.2, SpUn0912_0010.v2.2
Brassicaceae	Brassica nigra	1	BniB05g004180.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G2110
Casuarinaceae	Casuarina glauca	1	Cgl07G2334
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g02170, gene.Cymno17g04670
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g25640
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.1108, evm.TU.LG08.500
Plantaginaceae	Plantago ovata	1	Pov_00012304
Plumbaginaceae	Limonium bicolor	2	Lb3G17544, Lb7G33885
Poaceae	Echinochloa crus-galli	3	AH06.2404, BH06.2201, CH06.2419
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0545980, gene-QOZ80_6BG0499380
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0746090.1
Poaceae	Lolium multiflorum	1	gene-QYE76_036733
Poaceae	Oryza coarctata	2	Oco11G013560, Oco12G013700
Poaceae	Oryza sativa	1	LOC_Os06g43210.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G202600, gene-BS78_K255500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0401639, Pt_Chr0401658
Poaceae	Sporobolus alterniflorus	4	Chr02G030640, Chr05G008390, Chr10G018680, Chr11G003910
Poaceae	Thinopyrum elongatum	1	Tel7E01G913300
Poaceae	Triticum dicoccoides	1	gene_TRIDC7AG073430
Poaceae	Triticum aestivum	3	TraesCS7A02G524600.2, TraesCS7B02G442100.1 ... TraesCS7D02G513500.2
Poaceae	Zea mays	2	Zm00001eb275450_P001, Zm00001eb387290_P001
Poaceae	Zoysia japonica	2	nbis-gene-40933, nbis-gene-9944
Poaceae	Zoysia macrostachya	2	Zma_g30868, Zma_g33119
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1466, evm.TU.LG08.866, evm.TU.LG09.425 ... evm.TU.LG22.1057
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g04690
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_2_RagTag.338
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-4858
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-17147
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-9802
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000009l.752
Rhizophoraceae	Kandelia obovata	1	Maker00005318
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-2508
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-6054
Salicaceae	Populus euphratica	2	populus_peu01516, populus_peu36318
Solanaceae	Lycium barbarum	1	gene-LOC132599023
Solanaceae	Solanum chilense	1	SOLCI000181600
Solanaceae	Solanum pennellii	1	gene-LOC107002825
Tamaricaceae	Reaumuria soongarica	1	STRG.11587_chr02_-
Tamaricaceae	Tamarix chinensis	1	TC10G0314
Zosteraceae	Zostera marina	1	Zosma03g23310.v3.1