Basic Information
Locus ID:
Ag2G01393
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 103561261 | 103569637 | - | Ag2G01393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 30,212.16 Da | 37.50 | 76.10 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14350 | UBA_DCNL | 8 | 48 | 1.51937E-16 | - |
| Pfam | PF14555 | UBA-like domain | 9 | 47 | 5.0E-10 | - |
| Pfam | PF03556 | Cullin binding | 130 | 240 | 9.0E-37 | IPR005176 |
| SUPERFAMILY | SSF46934 | UBA-like | 7 | 46 | 1.14E-7 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 6 | 47 | 5.4E-8 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 52 | 142 | 3.6E-31 | - |
| Gene3D | G3DSA:1.10.238.200 | Cullin, PONY binding domain | 143 | 251 | 3.8E-41 | IPR042460 |
| ProSiteProfiles | PS51229 | DCUN1 domain profile. | 54 | 242 | 55.213306 | IPR005176 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12760.1 | 0 | |
| RefSeq | XP_017253688.1 | PREDICTED: DCN1-like protein 1 [Daucus carota subsp. sativus] | 0 |
| Q8BZJ7 | DCN1-like protein 2 OS=Mus musculus OX=10090 GN=Dcun1d2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5J4ZZA5 | Defective in cullin neddylation protein OS=Nyssa sinensis OX=561372 GN=F0562_009842 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 72.214142 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 42.666924 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 42.839531 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 37.101276 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 38.336456 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 49.906868 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.46167 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 34.605629 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 89.448471 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 97.828148 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 113.068398 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 108.402863 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 87.129326 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 67.317871 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 99.219177 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 100.470909 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 117.443558 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 71.933998 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 73.111526 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 63.622051 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 72.009819 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 111.970093 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 131.319794 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 108.083817 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 116.257767 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 84.394608 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 87.388855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 69.041946 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 79.53846 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 117.177094 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 181.348557 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 167.462189 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 86.634682 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 73.601936 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 67.362816 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 106.226997 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 103.248444 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 107.842751 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 86.080429 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 52.631657 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.020802 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 89.566017 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 143.5578 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 305.259369 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 287.211151 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 102.881805 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 181.482819 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 112.417992 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 122.530075 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 118.653801 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24709, jg38514 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7744 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033861 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19541, Sbi_jg44094 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17876 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019052 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl64400, Sgl68852 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019333, gene:ENSEOMG00000019383 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008720, CQ.Regalona.r1.2BG0011250 |
| Apiaceae | Apium graveolens | 1 | Ag2G01393 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G004360, COCNU_13G008440 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715917, gene-LOC103724063 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2719.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G01776, Ftri3G17636, Ftri7G22100 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G12760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021347m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g10920.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g052330.2N, BniB07g026260.2N, BniB07g056090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1718 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1874 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1082s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g38100 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8996 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2958 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006185 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05355 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.932, AH07.3437, BH06.963, BH07.3269, CH06.1059 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0145330, gene-QOZ80_2BG0200790 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0450380.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G006090, Oco12G006130 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g12690.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G275300, gene-BS78_10G099000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703479 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G019280, Chr14G004560, Chr21G003970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G208300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG017430, gene_TRIDC5BG018450 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G109900.1, TraesCS5B02G115600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb194650_P003, Zm00001eb279840_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35155, nbis-gene-51371 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29409, Zma_g31646 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2505, evm.TU.LG08.177 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.32 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10425 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9215 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10723 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.22 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013933 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9323 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6860 |
| Salicaceae | Populus euphratica | 1 | populus_peu06695 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620380, gene-LOC132636258 |
| Solanaceae | Solanum chilense | 2 | SOLCI004297100, SOLCI004483500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006965, gene-LOC107026318 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27753_chr04_-, gene_5938 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2286, TC02G3627 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22500.v3.1 |