Basic Information
Locus ID:
Ag2G01348
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Peroxisome biogenesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 96987217 | 96989580 | + | Ag2G01348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 67,466.31 Da | 44.48 | 113.12 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 61 | 3.92E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 239 | 574 | 6.02E-22 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 60 | 302 | 2.88E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 14 | 224 | 8.8E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 430 | 610 | 9.9E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 429 | 7.0E-22 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 485 | 510 | 94.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 433 | 454 | 380.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 354 | 379 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 328 | 353 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 543 | 568 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 405 | 430 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 111 | 136 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 511 | 536 | 0.019 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55590.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017253309.1 | PREDICTED: F-box protein At-B [Daucus carota subsp. sativus] | 0 |
| Q9ZWC6 | F-box protein At-B OS=Arabidopsis thaliana OX=3702 GN=ATB PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XTB2 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016809 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.007586 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.691028 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.126106 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.328312 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.08423 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.817934 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.131305 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.645093 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.698065 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.01124 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.784161 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.902861 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.172026 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.999119 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.364404 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.330453 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.129354 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.188401 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.230179 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.320198 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.246748 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.056338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.620382 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.038277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.370517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.300603 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.018896 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.936135 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.821949 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.862847 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.199671 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.702617 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.077042 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.288006 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.075315 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.843424 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.77173 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.808968 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.911333 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.712617 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.684304 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.446285 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.112026 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.476957 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.753809 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.749011 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.324436 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.961436 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.684557 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.554387 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24668, jg854 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21929 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009612 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g213390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12290, Sbi_jg47273 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21541 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018842 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55519, Sgl60738 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017151, gene:ENSEOMG00000037998 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0002410, CQ.Regalona.r1.9AG0022260 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30151010, pistato.v30151060, pistato.v30277580 |
| Apiaceae | Apium graveolens | 2 | Ag2G01348, Ag6G02381 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G006520, scaffold023760G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696458, gene-LOC103711993 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.504.V1.1, AsparagusV1_04.2356.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G09473, Ftri15G13747 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55590.1, AT2G17020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011328m.g.v1.0, Thhalv10022585m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41210.v2.2, Sp3g30310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g026470.2N, BniB04g053880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1582, Ceq07G1777 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1746, Cgl07G1924 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g05150, gene.Cymno02g10660 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g09020, gene.Thate08g04950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2134, evm.TU.LG08.360 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001726, Pov_00038034 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G17288, Lb3G17289, Lb3G17293 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.5222, AH08.1958, BH01.4988, BH08.2058, CH01.5592 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0232800, gene-QOZ80_3BG0295160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0409150.1, HORVU.MOREX.r3.7HG0678220.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029853, gene-QYE76_071078 |
| Poaceae | Oryza coarctata | 4 | Oco05G002180, Oco06G002140, Oco15G011660, Oco16G010910 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g04270.1, LOC_Os08g39060.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G490300, gene-BS78_07G179000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100359, Pt_Chr0100441, Pt_Chr0404027 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G037900, Chr01G038020, Chr07G006430, Chr12G001520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G543400, Tel7E01G426900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG055520, gene_TRIDC5AG071590 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4B02G331300.2, TraesCS4D02G328200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb199550_P002, Zm00001eb402660_P003 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15229, nbis-gene-17361, nbis-gene-3000 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g2131, Zma_g24314, Zma_g29124, Zma_g367 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1779, evm.TU.LG09.154 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g03480, gene.Posoc03g09780 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2353, evm.TU.Scaffold_1_RagTag.2354 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5213 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7908 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3217 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.39 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017039 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4596 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22490 |
| Salicaceae | Populus euphratica | 3 | populus_peu08659, populus_peu17079, populus_peu36693 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599361, gene-LOC132618602 |
| Solanaceae | Solanum chilense | 2 | SOLCI000015500, SOLCI004292800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007755, gene-LOC107024198 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11746_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0178 |
| Zosteraceae | Zostera marina | 2 | Zosma03g14410.v3.1, Zosma06g26760.v3.1 |