Basic Information
Locus ID:
Ag2G01342
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 95844417 | 95850178 | - | Ag2G01342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 81,758.55 Da | 48.65 | 61.06 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 437 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26450.1 | 0 | |
| RefSeq | XP_017252781.1 | PREDICTED: uncharacterized protein At4g26450 [Daucus carota subsp. sativus] | 0 |
| P0CB21 | Uncharacterized protein At4g26450 OS=Arabidopsis thaliana OX=3702 GN=At4g26450 PE=4 SV=1 | 0 | |
| TrEMBL | A0A164XT60 | BAT2_N domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016806 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.47956 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.435344 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.957162 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.229851 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.935185 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.946543 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.552042 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.660005 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.491894 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 42.735931 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.956375 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 46.768391 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 38.41177 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.716976 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 33.882679 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.600037 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 37.637733 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.224598 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 29.318094 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 29.175545 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.914967 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.895536 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.684883 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.289656 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.939541 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 38.697895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 31.667717 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 35.116577 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 39.4977 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.846016 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.988451 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.15389 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.715429 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.843384 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.785084 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.783327 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.539081 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.144711 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.740101 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.26722 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.349761 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.879675 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.96677 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.997906 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 32.795795 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.401903 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.783054 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.721453 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.40052 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.168898 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20599, jg21669, jg38472, jg38474 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7179 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008994, Ah021957 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g089740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18409, Sbi_jg36814 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4727 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017388 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23501, Sgl28632 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009838, gene:ENSEOMG00000029166 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0001740, CQ.Regalona.r1.4BG0025330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150950 |
| Apiaceae | Apium graveolens | 1 | Ag2G01342 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G002120, scaffold011427G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696508, gene-LOC103701265, gene-LOC120112825 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.361.V1.1, AsparagusV1_04.362.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G25316 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G26450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024531m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g24360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g082460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1577 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1740 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g02770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g17120 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2101 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004326, Pov_00038032 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30466 |
| Poaceae | Echinochloa crus-galli | 6 | AH09.1019, AH09.1023, BH09.1093, BH09.1097, CH09.1228 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0133470, gene-QOZ80_2BG0189030 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0168590.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G012180, Oco04G014130, Oco07G005980, Oco08G005970 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g34500.1, LOC_Os04g35170.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G158100, gene-BS78_06G096500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302678, Pt_Chr0302717, Pt_Chr0705374 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G010150, Chr09G014650, Chr13G010670, Chr15G011630 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G535200, Tel6E01G383300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG043980, gene_TRIDC2BG046690 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G303300.1, TraesCS2B02G319800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb082760_P001, Zm00001eb181860_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18845, nbis-gene-37851, nbis-gene-55342 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16450, Zma_g19704 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.549, evm.TU.LG09.2123 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.7 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19747 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4041 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22388 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.4 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010793 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7959 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22540 |
| Salicaceae | Populus euphratica | 3 | populus_peu00008, populus_peu17083, populus_peu17084 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627636, gene-LOC132636272 |
| Solanaceae | Solanum chilense | 2 | SOLCI004462500, SOLCI007038000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002250, gene-LOC107007646 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12072, gene_16947 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0611, TC06G0612 |
| Zosteraceae | Zostera marina | 1 | Zosma05g19610.v3.1 |