Basic Information
Locus ID:
Ag2G01333
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the UPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 94878894 | 94879682 | - | Ag2G01333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 30,182.44 Da | 48.59 | 91.49 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00475 | Cis_IPPS | 11 | 251 | 3.22931E-91 | IPR001441 |
| Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 15 | 252 | 5.1E-74 | IPR001441 |
| SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 6 | 251 | 4.45E-67 | IPR036424 |
| Gene3D | G3DSA:3.40.1180.10 | - | 1 | 251 | 2.2E-87 | IPR036424 |
| TIGRFAM | TIGR00055 | uppS: di-trans,poly-cis-decaprenylcistransferase | 8 | 159 | 2.2E-45 | IPR001441 |
| ProSitePatterns | PS01066 | Undecaprenyl pyrophosphate synthase family signature. | 203 | 220 | - | IPR018520 |
| Hamap | MF_01139 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. | 8 | 258 | 27.28116 | IPR001441 |
| Coils | Coil | Coil | 146 | 166 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17570.1 | Undecaprenyl pyrophosphate synthetase family protein. | 0 |
| RefSeq | XP_017248791.1 | PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Daucus carota subsp. sativus] | 0 |
| K7WCI9 | Dehydrodolichyl diphosphate synthase CPT3 OS=Solanum lycopersicum OX=4081 GN=CPT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164Z2P4 | Alkyl transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018475 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.759529 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.69035 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.553795 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.157427 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.103971 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.098053 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.117342 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.223755 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.422881 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.074561 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.328771 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.719842 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.97187 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.459137 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.859833 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.072339 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.621503 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.19771 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.754786 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.161286 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.478909 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.982645 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.00865 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.225916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.642075 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.459665 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.597803 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.988874 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.445868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.424151 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.412614 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.354663 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 29.273098 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.388458 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.969542 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.2221 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.526199 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.140418 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.93257 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.239562 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.846583 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.144182 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.808109 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.666475 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.413759 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 18.967304 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.8381 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.705926 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 13.195723 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.781501 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg19928, jg30930, jg30931, jg7050 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_13369, gene_13370, gene_13491, gene_4083 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000200, Ah028584 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121040 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg24997, Sbi_jg26784, Sbi_jg31448, Sbi_jg33782 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg19751, Seu_jg25470, Seu_jg8475 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011714, GOSA_00019558 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl53157, Sgl54413, Sgl58427, Sgl59742, Sgl73641, Sgl77104 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004155, gene:ENSEOMG00000008873 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0026250, CQ.Regalona.r1.5BG0027800 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30058840 |
| Apiaceae | Apium graveolens | 4 | Ag2G01333, Ag3G00162, Ag3G00163, Ag6G00968 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G003370, COCNU_10G007510 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697150, gene-LOC103711167, gene-LOC103720169 ... |
| Asparagaceae | Asparagus officinalis | 7 | AsparagusV1_01.2654.V1.1, AsparagusV1_02.730.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G19691, Ftri18G06108, Ftri6G14049, Ftri9G31236 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17570.1, AT5G60500.1, AT5G60510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014376m.g.v1.0, Thhalv10023082m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g09720.v2.2, Sp6g22080.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g013910.2N, BniB02g040240.2N, BniB03g065620.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1560, Ceq06G0065, Ceq06G0066 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1628, Cgl06G0072, Cgl06G0073 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0623s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g04320, gene.Thate06g18350, gene.Thate07g05850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9722 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2870, evm.TU.LG09.935 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022417 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.3562, BH05.1238, BH06.508, CH01.2737, CH05.1465 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509930, gene-QOZ80_6BG0462260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656150.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_005574, gene-QYE76_028398 |
| Poaceae | Oryza coarctata | 2 | Oco11G003190, Oco12G003160 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g07120.1, LOC_Os07g41680.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G358700, gene-BS78_10G056800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G010560, Chr07G001370, Chr11G022050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G258200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG015220, gene_TRIDC7BG004560 |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G130000.1, TraesCS7B02G030000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb375240_P001, Zm00001eb375270_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34809, nbis-gene-5090 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29170, Zma_g31419 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.1189, evm.TU.LG04.1606, evm.TU.LG09.783 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.35, evm.TU.Scaffold_6_RagTag.2188 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-119, nbisL1-mrna-120, nbisL1-mrna-121 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15401 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5843 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.554, add.evm.TU.utg000019l.503 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006824 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23071, nbisL1-mrna-6603 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2485, nbisL1-mrna-2930 |
| Salicaceae | Populus euphratica | 4 | populus_peu14019, populus_peu14021, populus_peu23225 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621784, gene-LOC132622694, gene-LOC132628036 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002843300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012648 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28401_chr04_-, gene_11306 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2386 |
| Zosteraceae | Zostera marina | 2 | Zosma03g11240.v3.1, Zosma06g30470.v3.1 |