halophFGD

Basic Information

Locus ID: Ag2G01282

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Leucine rich repeat N-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	86361922	86365379	-	Ag2G01282

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.81	105,485.65 Da	30.61	102.22	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	485	544	6.5E-9	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	33	78	8.7E-6	IPR013210
Pfam	PF00069	Protein kinase domain	663	934	4.4E-48	IPR000719
Pfam	PF13855	Leucine rich repeat	365	424	3.2E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	178	236	2.9E-7	IPR001611
Pfam	PF13855	Leucine rich repeat	83	140	5.0E-7	IPR001611
SUPERFAMILY	SSF52047	RNI-like	259	546	4.55E-62	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	657	937	1.31E-69	IPR011009
SUPERFAMILY	SSF52058	L domain-like	66	310	8.84E-51	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	660	745	2.0E-19	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	194	260	8.9E-19	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	746	962	3.3E-57	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	261	583	1.3E-94	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	32	193	3.2E-39	IPR032675
SMART	SM00369	LRR_typ_2	199	223	16.0	IPR003591
SMART	SM00220	serkin_6	661	937	5.5E-34	IPR000719
SMART	SM00369	LRR_typ_2	267	290	280.0	IPR003591
SMART	SM00369	LRR_typ_2	104	127	74.0	IPR003591
SMART	SM00369	LRR_typ_2	387	411	280.0	IPR003591
SMART	SM00369	LRR_typ_2	291	315	22.0	IPR003591
SMART	SM00369	LRR_typ_2	507	530	150.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	661	962	38.845192	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	788	800	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	667	691	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	937	959	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	942	959	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G28650.1	Leucine-rich repeat transmembrane protein kinase family protein.
RefSeq	XP_017253496.1	PREDICTED: MDIS1-interacting receptor like kinase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9M0G7	MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1
TrEMBL	A0A164Z3T3	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018523 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.339895	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.261492	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.063136	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.119482	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.198835	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.301511	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.375595	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.26747	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.208891	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	5.509181	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	5.890297	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.42624	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.527833	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.700807	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.116466	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.02769	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.995378	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.33532	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.088916	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.801541	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.211601	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.779683	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.993409	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.621723	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.641627	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.237212	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.243687	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	5.735717	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.103151		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.092312		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.072487		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.480305		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.12023		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.051652		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.713888	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.453287	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.149522	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.027275	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.249471	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.278299	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.075999	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.870968	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.399107	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.433106	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10118, jg10119, jg14119, jg14618, jg2424, jg2714, jg35458 ... jg37794
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10348, gene_3113, gene_6429
Amaranthaceae	Atriplex hortensis	3	Ah005597, Ah018200, Ah029164
Amaranthaceae	Beta vulgaris	2	BVRB_4g077400, BVRB_4g077420
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15318, Sbi_jg17302, Sbi_jg56136, Sbi_jg61939
Amaranthaceae	Salicornia europaea	2	Seu_jg26614, Seu_jg559
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015468, GOSA_00020229, GOSA_00022870
Amaranthaceae	Suaeda glauca	6	Sgl02194, Sgl07351, Sgl24365, Sgl29541, Sgl74278, Sgl77843
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004998, gene:ENSEOMG00000009649 ... gene:ENSEOMG00000010788, gene:ENSEOMG00000028873, gene:ENSEOMG00000031986, gene:ENSEOMG00000036881, gene:ENSEOMG00000038436, gene:ENSEOMG00000040889, gene:ENSEOMG00000045823
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0008940, CQ.Regalona.r1.3BG0009600 ... CQ.Regalona.r1.4AG0006780, CQ.Regalona.r1.4BG0006900, CQ.Regalona.r1.7AG0011530, CQ.Regalona.r1.7BG0013690
Anacardiaceae	Pistacia vera	3	pistato.v30015380, pistato.v30090820, pistato.v30180680
Apiaceae	Apium graveolens	4	Ag10G00850, Ag2G01282, Ag2G01928, Ag9G01334
Arecaceae	Cocos nucifera	4	COCNU_07G009320, COCNU_08G007150, COCNU_09G002230 ... COCNU_09G009070
Arecaceae	Phoenix dactylifera	5	gene-LOC103699355, gene-LOC103711908, gene-LOC103717391 ... gene-LOC103720511, gene-LOC120105738
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1702.V1.1, AsparagusV1_04.288.V1.1 ... AsparagusV1_07.1936.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G11147, Ftri17G11296, Ftri4G30777
Brassicaceae	Arabidopsis thaliana	3	AT1G08590.1, AT4G28650.1, AT5G61480.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003570m.g.v1.0, Thhalv10006658m.g.v1.0 ... Thhalv10024302m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g07250.v2.2, Sp2g24680.v2.2, Sp7g26620.v2.2
Brassicaceae	Brassica nigra	3	BniB02g075780.2N, BniB03g002800.2N, BniB05g008910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1260, Ceq06G2410, Ceq08G0222
Casuarinaceae	Casuarina glauca	2	Cgl06G1320, Cgl08G0174
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g06670, gene.Cymno18g03800
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate08g00720, gene.Thate08g24000, gene.Thate09g02880
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6370
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2363, evm.TU.LG03.2175, evm.TU.LG04.1368
Plantaginaceae	Plantago ovata	4	Pov_00012395, Pov_00015187, Pov_00024569, Pov_00040414
Plumbaginaceae	Limonium bicolor	1	Lb1G06459
Poaceae	Echinochloa crus-galli	6	AH01.5283, AH07.130, BH01.4927, BH07.74, CH01.5530 ... CH03.4751
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0099020, gene-QOZ80_2BG0152500 ... gene-QOZ80_3AG0233520, gene-QOZ80_3BG0294420, gene-QOZ80_8AG0617140, gene-QOZ80_8BG0644700
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0407340.1.CDS1 ... HORVU.MOREX.r3.6HG0543250.1.CDS1, HORVU.MOREX.r3.7HG0701280.1
Poaceae	Lolium multiflorum	4	gene-QYE76_019466, gene-QYE76_019467, gene-QYE76_032474 ... gene-QYE76_070831
Poaceae	Oryza coarctata	6	Oco03G000590, Oco04G000550, Oco05G002730, Oco06G002710 ... Oco15G001950, Oco16G002020
Poaceae	Oryza sativa	3	LOC_Os02g02140.1, LOC_Os03g05140.1, LOC_Os08g05290.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G483200, gene-BS78_04G008900 ... gene-BS78_07G041300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0100092, Pt_Chr0100198, Pt_Chr0100206, Pt_Chr0200919 ... Pt_Chr0402870, Pt_Chr0405582
Poaceae	Sporobolus alterniflorus	8	Chr01G037400, Chr04G004610, Chr06G035970, Chr07G006930 ... Chr0G010260, Chr15G027140, Chr20G010640, Chr29G011720
Poaceae	Thinopyrum elongatum	3	Tel4E01G514300, Tel6E01G082400, Tel7E01G523700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG055770, gene_TRIDC4BG052660 ... gene_TRIDC6AG003630, gene_TRIDC6BG005190, gene_TRIDC7AG042650, gene_TRIDC7BG033810
Poaceae	Triticum aestivum	9	TraesCS4A02G409400.1.cds1, TraesCS4B02G309300.1.cds1 ... TraesCS4D02G307500.1.cds1, TraesCS6A02G029100.1.cds1, TraesCS6B02G042000.1.cds1, TraesCS6D02G033300.1.cds1, TraesCS7A02G305700.1, TraesCS7B02G205900.1, TraesCS7D02G302400.1
Poaceae	Zea mays	4	Zm00001eb003660_P001, Zm00001eb172920_P001 ... Zm00001eb229700_P001, Zm00001eb402940_P001
Poaceae	Zoysia japonica	2	nbis-gene-41556, nbis-gene-4523
Poaceae	Zoysia macrostachya	5	Zma_g12054, Zma_g14824, Zma_g2083, Zma_g23604, Zma_g4433
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.941, evm.TU.LG08.792, evm.TU.LG11.1498 ... evm.TU.LG12.799, evm.TU.LG22.1133
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g15720, gene.Posoc07g04720
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1258, evm.TU.Scaffold_1_RagTag.333 ... evm.TU.Scaffold_4_RagTag.221, evm.TU.Scaffold_9_RagTag.1056
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-12450, nbisL1-mrna-12559, nbisL1-mrna-21129 ... nbisL1-mrna-29131, nbisL1-mrna-7900
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10065, nbisL1-mrna-18608, nbisL1-mrna-8970 ... nbisL1-mrna-9006
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12826, nbisL1-mrna-2075, nbisL1-mrna-5380 ... nbisL1-mrna-7279
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000003l.144, add.evm.TU.utg000010l.115 ... add.evm.TU.utg000012l.83, evm.TU.utg000008l.136
Rhizophoraceae	Kandelia obovata	4	Maker00001364, Maker00008876, Maker00009420, Maker00011041
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-1413, nbisL1-mrna-2412, nbisL1-mrna-569 ... nbisL1-mrna-7742
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-21516, nbisL1-mrna-301, nbisL1-mrna-4999 ... nbisL1-mrna-6193, nbisL1-mrna-8892
Salicaceae	Populus euphratica	5	populus_peu03345, populus_peu16000, populus_peu19500 ... populus_peu30766, populus_peu34191
Solanaceae	Lycium barbarum	5	gene-LOC132610387, gene-LOC132615614, gene-LOC132631700 ... gene-LOC132632468, gene-LOC132640476
Solanaceae	Solanum chilense	4	SOLCI004265800, SOLCI005301700, SOLCI005499800 ... SOLCI007350200
Solanaceae	Solanum pennellii	4	gene-LOC107015273, gene-LOC107015818, gene-LOC107018827 ... gene-LOC114073832
Tamaricaceae	Reaumuria soongarica	3	gene_12967, gene_4296, gene_7147
Tamaricaceae	Tamarix chinensis	3	TC01G0550, TC05G0198, TC05G2260
Zosteraceae	Zostera marina	1	Zosma04g25890.v3.1