Basic Information
Locus ID:
Ag2G01260
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 84306203 | 84312203 | + | Ag2G01260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 43,336.02 Da | 59.12 | 57.16 | -1.01 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24740.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_017252447.1 | PREDICTED: uncharacterized protein LOC108222960 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164Z4D3 | Zinc finger, RING/FYVE/PHD-type OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 49.388885 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 48.882435 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 43.399441 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 44.616318 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 46.531506 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 46.209339 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 47.107197 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 46.742817 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 51.318001 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 50.040066 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 52.293728 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.833668 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.427704 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 50.516033 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 58.668663 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 52.995949 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 71.553558 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 42.466022 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 43.39526 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.52552 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.852402 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 69.526352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 63.401012 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 60.184914 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 57.793797 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 57.97599 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 52.162926 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 55.326641 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 53.612679 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 26.838228 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.935049 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.887604 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.468468 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 32.3988 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.842447 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 26.562035 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 28.263353 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 23.370886 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.447462 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 31.569874 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 29.877861 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 46.39304 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 54.35326 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 60.323074 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 65.611031 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 34.933411 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 72.700287 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 59.216877 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 81.467583 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 77.773155 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg35494, jg37770, jg37771, jg8626 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5355 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028228 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26507, Sbi_jg34057 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15037 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011952 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73788, Sgl77293 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008194, gene:ENSEOMG00000035818 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010700, CQ.Regalona.r1.7BG0012880 |
| Apiaceae | Apium graveolens | 1 | Ag2G01260 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G009340, scaffold013426G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103714898, gene-LOC103717935, gene-LOC103720148 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.299.V1.1, AsparagusV1_07.1913.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G01817 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002596m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g035820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2018 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2126 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07000 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g05940, gene.Thate03g07710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9748 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1526 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015115 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13938 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0359170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0096770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047990 |
| Poaceae | Oryza coarctata | 2 | Oco07G000630, Oco08G000730 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g04010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G020300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306183 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G018470, Chr25G016100, Chr26G001300, Chr30G015210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G039900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG001150, gene_TRIDC2BG001090 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G011300.1.cds1, TraesCS2B02G010300.1 |
| Poaceae | Zea mays | 2 | Zm00001eb088970_P001, Zm00001eb419470_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37410 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20845 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.474, evm.TU.LG04.287 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g15620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1095 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21094 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8575 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18612 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009812 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17262 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4969 |
| Salicaceae | Populus euphratica | 2 | populus_peu31114, populus_peu31130 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610153 |
| Solanaceae | Solanum chilense | 3 | SOLCI005991200, SOLCI005991400, SOLCI005991500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031226 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.403_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0477 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25840.v3.1, Zosma06g28990.v3.1 |