Basic Information
Locus ID:
Ag2G01259
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 84132795 | 84134453 | - | Ag2G01259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 27,611.27 Da | 46.24 | 78.05 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 128 | 148 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24750.1 | 0 | |
| RefSeq | XP_017252004.1 | PREDICTED: uncharacterized protein LOC108222622 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161YNC8 | DUF4005 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.403739 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.548643 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.369318 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.077335 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.344689 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.46583 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.496395 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.310575 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.149614 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.239442 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.108387 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.690517 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.190673 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.262197 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.673001 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.181898 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.116217 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.085217 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.116458 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.10851 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.183561 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.669168 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.192091 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.162775 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.257506 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.086378 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35496, jg37768, jg8623 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5354 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028223 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26506, Sbi_jg34058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15036 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011953 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73787, Sgl77292 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007985, gene:ENSEOMG00000037997 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0010710 |
| Apiaceae | Apium graveolens | 3 | Ag2G01259, Ag7G00060, Ag9G02873 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011320, COCNU_09G009020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC120104320, gene-LOC120104382 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1459.V1.1, AsparagusV1_07.1932.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G34097 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002691m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g035810.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1528 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015113 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13937, Lb5G28687 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.18, BH06.9, CH06.10 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0505490, gene-QOZ80_6BG0457560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0634490.1 |
| Poaceae | Oryza coarctata | 1 | Oco11G000160 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G000600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404068, Pt_Chr0404089 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G000930, Chr14G000020, Chr14G000360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G011700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG070710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G498800.2, TraesCS7A02G001800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb379630_P001 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.989, evm.TU.LG04.285, evm.TU.LG12.743 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1190 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11657 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9854 |
| Salicaceae | Populus euphratica | 1 | populus_peu30932 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609987, gene-LOC132626678 |
| Solanaceae | Solanum chilense | 2 | SOLCI004651500, SOLCI004978000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021219, gene-LOC107030741 |