halophFGD

Basic Information

Locus ID: Ag2G01249

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Transcriptional corepressor LEUNIG-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	83578014	83584945	-	Ag2G01249

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.75	84,764.91 Da	49.72	70.06	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	495	773	1.04494E-61	-
Pfam	PF00400	WD domain, G-beta repeat	532	565	2.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	738	773	0.26	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	496	523	6.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	657	690	0.023	IPR001680
Pfam	PF08513	LisH	10	36	2.2E-6	IPR006594
Pfam	PF00400	WD domain, G-beta repeat	571	609	0.013	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	495	773	1.72E-62	IPR036322
Gene3D	G3DSA:2.130.10.10	-	624	773	9.0E-30	IPR015943
Gene3D	G3DSA:2.130.10.10	-	466	623	1.8E-31	IPR015943
SMART	SM00320	WD40_4	526	565	5.4E-6	IPR001680
SMART	SM00320	WD40_4	485	523	2.0E-5	IPR001680
SMART	SM00667	Lish	8	40	0.0094	IPR006594
SMART	SM00320	WD40_4	569	609	0.0029	IPR001680
SMART	SM00320	WD40_4	612	649	8.0	IPR001680
SMART	SM00320	WD40_4	734	773	0.002	IPR001680
SMART	SM00320	WD40_4	693	732	2.7	IPR001680
SMART	SM00320	WD40_4	652	690	7.1E-6	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	576	618	8.904377	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	533	565	12.74747	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	533	565	10.601049	-
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	8	40	9.055138	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	498	532	9.104886	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	741	773	12.847725	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	741	773	11.998316	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	510	524	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	552	566	4.8E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	510	524	4.8E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	760	773	4.8E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	343	401	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G32700.6	LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.
RefSeq	XP_017253056.1	PREDICTED: transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	O48847	Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1
TrEMBL	A0A5B7AJ74	LisH domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_025439 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	39.96748	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	38.118698	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	28.750496	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	32.053696	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	35.107647	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	26.043587	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	29.162287	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	20.154263	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	43.624687	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	36.039566	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	37.253117	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	48.133041	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	48.754112	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	42.141457	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	27.035038	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.554743	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	29.994154	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	28.84396	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.301819	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	20.268633	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	24.300447	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	41.500198	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	40.68541	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	33.277515	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	37.08152	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	30.82988	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	28.970093	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	32.339401	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	33.691444	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	10.41		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	16.867788		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	13.191734		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.631588		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	34.0574		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	19.344255		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	23.11742		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	11.764994		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	17.272387		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.025217	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.090812	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.540814	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	42.942482	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	48.867619	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	64.223083	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	68.802704	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	44.372284	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	58.388111	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	72.094833	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	69.651054	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	68.020699	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16251, jg20280, jg22059, jg8611
Aizoaceae	Mesembryanthemum crystallinum	2	gene_308, gene_6472
Amaranthaceae	Atriplex hortensis	1	Ah028258
Amaranthaceae	Beta vulgaris	2	BVRB_7g167480, BVRB_8g183000
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg26043, Sbi_jg26535, Sbi_jg34031, Sbi_jg56959 ... Sbi_jg9889
Amaranthaceae	Salicornia europaea	2	Seu_jg15064, Seu_jg18834
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011930, GOSA_00017054
Amaranthaceae	Suaeda glauca	4	Sgl45950, Sgl50646, Sgl73822, Sgl77324
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005931, gene:ENSEOMG00000037452 ... gene:ENSEOMG00000041460
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0010420, CQ.Regalona.r1.7BG0012500 ... CQ.Regalona.r1.8AG0005430, CQ.Regalona.r1.8BG0005590
Anacardiaceae	Pistacia vera	2	pistato.v30014570, pistato.v30241180
Apiaceae	Apium graveolens	3	Ag10G00753, Ag2G01249, Ag2G02796
Arecaceae	Cocos nucifera	4	COCNU_07G000990, COCNU_08G011640, COCNU_09G009570 ... COCNU_10G000720
Arecaceae	Phoenix dactylifera	4	gene-LOC103703910, gene-LOC103706939, gene-LOC103711896 ... gene-LOC103716258
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.166.V1.1, AsparagusV1_07.1976.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G04211, Ftri12G14860, Ftri15G01661, Ftri4G09309
Brassicaceae	Arabidopsis thaliana	1	AT2G32700.7
Brassicaceae	Eutrema salsugineum	1	Thhalv10016303m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g15040.v2.2, SpUn0199_0030.v2.2
Brassicaceae	Brassica nigra	3	BniB01g011410.2N, BniB06g021800.2N, BniB08g020560.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2005, Ceq07G0750
Casuarinaceae	Casuarina glauca	2	Cgl06G2114, Cgl07G0795
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g00390
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g06810
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-5394, nbisL1-mrna-6384, nbisL1-mrna-956 ... nbisL1-mrna-9750, nbisL1-mrna-9751
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.1547, evm.TU.LG11.588, evm.TU.LG11.589
Plantaginaceae	Plantago ovata	5	Pov_00012969, Pov_00015092, Pov_00024507, Pov_00024510 ... Pov_00031791
Plumbaginaceae	Limonium bicolor	1	Lb4G23999
Poaceae	Echinochloa crus-galli	6	AH01.649, AH07.3919, BH01.73, BH07.3726, CH07.3787 ... CH09.3263
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0009880, gene-QOZ80_1BG0058470 ... gene-QOZ80_2AG0150070, gene-QOZ80_2BG0205530, gene-QOZ80_3AG0207350
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0537790.1, HORVU.MOREX.r3.6HG0628510.1
Poaceae	Lolium multiflorum	2	gene-QYE76_026351, gene-QYE76_026670
Poaceae	Oryza coarctata	6	Oco03G025040, Oco04G025520, Oco05G029570, Oco06G030530 ... Oco07G010450, Oco08G010220
Poaceae	Oryza sativa	3	LOC_Os02g56880.1, LOC_Os03g64300.1, LOC_Os04g43130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G001500, gene-BS78_03G081900 ... gene-BS78_04G316500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106930, Pt_Chr0106931, Pt_Chr0604270, Pt_Chr0604343
Poaceae	Sporobolus alterniflorus	8	Chr01G000040, Chr04G033050, Chr07G032170, Chr09G016760 ... Chr0G014110, Chr12G038290, Chr13G001010, Chr15G000990
Poaceae	Thinopyrum elongatum	1	Tel5E01G904500
Poaceae	Triticum dicoccoides	4	gene_TRIDC5BG083790, gene_TRIDC6AG057060 ... gene_TRIDC6BG066500, gene_TRIDC7BG000320
Poaceae	Triticum aestivum	8	TraesCS5B02G568500.2, TraesCS5D02G560700.2 ... TraesCS6A02G383400.1, TraesCS6B02G422600.1, TraesCS6B02G422700.1, TraesCS6D02G368200.1, TraesCS6D02G368300.1, TraesCS7B02G003100.1
Poaceae	Zea mays	2	Zm00001eb065280_P001, Zm00001eb258660_P001
Poaceae	Zoysia japonica	2	nbis-gene-13185, nbis-gene-8342
Poaceae	Zoysia macrostachya	3	Zma_g14684, Zma_g17395, Zma_g8
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.35, evm.TU.LG03.1014, evm.TU.LG04.712 ... evm.TU.LG12.716
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01030, gene.Posoc06g19410
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.838, evm.TU.Scaffold_12_RagTag.839 ... evm.TU.Scaffold_3_RagTag.1369, evm.TU.Scaffold_5_RagTag.1202, evm.TU.Scaffold_6_RagTag.974
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11670, nbisL1-mrna-15693, nbisL1-mrna-1695
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12871, nbisL1-mrna-18194, nbisL1-mrna-20549 ... nbisL1-mrna-3654, nbisL1-mrna-4048, nbisL1-mrna-9076
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11247, nbisL1-mrna-18274, nbisL1-mrna-21576 ... nbisL1-mrna-2616
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.697, evm.TU.utg000011l.616 ... evm.TU.utg000019l.416, evm.TU.utg000027l.132
Rhizophoraceae	Kandelia obovata	6	Maker00001630, Maker00006284, Maker00006302, Maker00006307 ... Maker00007482, Maker00013031
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10624, nbisL1-mrna-12239, nbisL1-mrna-15147 ... nbisL1-mrna-9846
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-18131, nbisL1-mrna-19900, nbisL1-mrna-21933 ... nbisL1-mrna-4366
Salicaceae	Populus euphratica	4	populus_peu04067, populus_peu10049, populus_peu30918 ... populus_peu34901
Solanaceae	Lycium barbarum	7	gene-LOC132607240, gene-LOC132607261, gene-LOC132610110 ... gene-LOC132622306, gene-LOC132622484, gene-LOC132640583, gene-LOC132640650
Solanaceae	Solanum chilense	3	SOLCI001175500, SOLCI004650700, SOLCI005438600
Solanaceae	Solanum pennellii	4	gene-LOC107011710, gene-LOC107023312, gene-LOC107028047 ... gene-LOC107031289
Tamaricaceae	Reaumuria soongarica	1	gene_7164
Tamaricaceae	Tamarix chinensis	1	TC01G0621
Zosteraceae	Zostera marina	3	Zosma01g38480.v3.1, Zosma01g38490.v3.1, Zosma05g22500.v3.1