Basic Information
Locus ID:
Ag2G01248
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc finger, ZZ type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 83388951 | 83399290 | - | Ag2G01248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 30,685.21 Da | 48.78 | 67.31 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 275 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24800.1 | proteolysis 1. Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). | 0 |
| RefSeq | XP_017248771.1 | PREDICTED: E3 ubiquitin-protein ligase PRT1 [Daucus carota subsp. sativus] | 0 |
| Q8LBL5 | E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana OX=3702 GN=PRT1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164Z4R7 | E3 ubiquitin-protein ligase PRT1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018569 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.341623 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.341276 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.441725 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.981386 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 31.405943 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.616081 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.525511 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.913223 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.137299 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.337133 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 29.953356 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 29.63575 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.725973 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.544571 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.575073 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.88987 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 27.212759 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.862083 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.117044 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.016342 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.042562 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.669298 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.800911 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.309196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.58773 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.089399 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.531731 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.966396 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.930656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 13.077881 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.056293 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.289267 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 28.457121 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.966545 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.975702 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.873598 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.430719 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.755825 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.075659 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.597616 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.268508 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 51.781799 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 33.97401 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 45.126247 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 43.629982 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 50.482666 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 37.910988 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.005199 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.069027 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.986668 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11016, jg35507, jg40606 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028259 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26536, Sbi_jg34030 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15065 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011929 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73823, Sgl77325 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005405, gene:ENSEOMG00000038572 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010410, CQ.Regalona.r1.7BG0012490 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241190 |
| Apiaceae | Apium graveolens | 1 | Ag2G01248 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001030, COCNU_10G000740, COCNU_10G000750 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703909, gene-LOC103716256 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.788.V1.1, AsparagusV1_02.2248.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G12942, Ftri12G26752, Ftri9G11644 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002569m.g.v1.0, Thhalv10002593m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g22540.v2.2, SpUn0027_0020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g035710.2N, BniB03g025850.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2113 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0681s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5393, nbisL1-mrna-9752 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1550, evm.TU.LG04.1551, evm.TU.LG11.587 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00004266, Pov_00015089, Pov_00015091, Pov_00033986 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23998 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2646, BH07.2466, CH07.2533 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0137800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0595860.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023722, gene-QYE76_023724 |
| Poaceae | Oryza coarctata | 2 | Oco03G015620, Oco04G016230 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g40810.1, LOC_Os09g33740.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G102800, gene-BS78_04G200700, gene-BS78_K026800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204201 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G007340, Chr09G025690, Chr0G011110, Chr13G007290 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G435000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG034970, gene_TRIDC6BG041660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G226100.1, TraesCS6B02G255500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb247460_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18509, nbis-gene-9459 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13912, Zma_g16683 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.451, evm.TU.LG03.1018, evm.TU.LG04.306 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g16360 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1370, evm.TU.Scaffold_5_RagTag.1203 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11671, nbisL1-mrna-1696 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16166, nbisL1-mrna-4328 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11246, nbisL1-mrna-2617, nbisL1-mrna-842 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.698, evm.TU.utg000011l.617 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007668, Maker00013505 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9845 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19901, nbisL1-mrna-4367 |
| Salicaceae | Populus euphratica | 3 | populus_peu04068, populus_peu30917, populus_peu34902 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609069, gene-LOC132610301 |
| Solanaceae | Solanum chilense | 1 | SOLCI004417800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031755 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.301_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0624, TC01G0626 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25990.v3.1 |