Basic Information
Locus ID:
Ag2G01241
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 82106075 | 82109618 | + | Ag2G01241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 64,438.19 Da | 31.89 | 93.84 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 119 | 6.9E-9 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 189 | 441 | 1.8E-80 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 19 | 119 | 5.49E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 17 | 124 | 1.8E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 33 | 138 | 3.1E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 189 | 466 | 77.782288 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 33 | 102 | 11.915877 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30520.1 | Phototropic-responsive NPH3 family protein. light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis | 0 |
| RefSeq | XP_017253722.1 | PREDICTED: root phototropism protein 2 [Daucus carota subsp. sativus] | 0 |
| Q682S0 | Root phototropism protein 2 OS=Arabidopsis thaliana OX=3702 GN=RPT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A164Z502 | Root phototropism protein 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.654687 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.564431 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.03486 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.812887 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.423731 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.432021 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.232911 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.420664 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 97.567337 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 132.103104 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 132.997452 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 93.41658 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 102.935081 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 92.639626 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 257.369751 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 163.068787 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 246.694702 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 163.484985 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 152.176926 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 197.774063 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 173.389862 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 89.388054 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 84.675385 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 93.713455 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 96.356369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 236.45108 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 181.859558 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 207.18425 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 348.518127 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 128.022903 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 93.013382 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 92.273796 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 171.887939 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 86.627586 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 214.563202 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 93.463112 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 49.118225 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 73.479759 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 256.597961 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 199.302292 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 128.911682 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.739859 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 51.622704 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 99.916901 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 50.68269 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 30.19158 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 59.284279 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.766474 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 27.775576 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 30.424656 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16724, jg35705, jg38066 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23353, gene_7996 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034154, Ah034155 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109820 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg20660, Sbi_jg20662, Sbi_jg23092 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16955, Seu_jg16956 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009227 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63407, Sgl67886 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017916, gene:ENSEOMG00000018283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012510, CQ.Regalona.r1.2BG0014150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131750 |
| Apiaceae | Apium graveolens | 1 | Ag2G01241 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716684 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1526.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22113, Ftri9G33387 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g019570.2N, BniB08g019010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2461 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2700, Cgl08G2703 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29700 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.522, evm.TU.LG01.523 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025533 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16590 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.93, AH05.23, AH05.3672, BH02.2753, BH04.100, BH05.46 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672670, gene-QOZ80_9BG0696280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0353070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065064 |
| Poaceae | Oryza coarctata | 2 | Oco23G000130, Oco23G000610 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g02610.1, LOC_Os12g02530.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G017000, gene-BS78_08G017000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103781 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G016170, Chr31G006700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G194100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG030820, gene_TRIDC4BG019030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G192900.1, TraesCS4B02G122300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb093890_P001, Zm00001eb405820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25786 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.144, evm.TU.LG15.20 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.704 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24875 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3355, nbisL1-mrna-3356 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19110, nbisL1-mrna-19111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.144 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-146 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10403 |
| Salicaceae | Populus euphratica | 2 | populus_peu14523, populus_peu17030 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643960 |
| Solanaceae | Solanum chilense | 1 | SOLCI006183900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026001 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32235_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1399 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17390.v3.1 |