Basic Information
Locus ID:
Ag2G01238
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 81715753 | 81718529 | - | Ag2G01238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.50 | 25,103.20 Da | 38.80 | 72.40 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01433 | Ribosomal_L16_L10e | 41 | 166 | 2.94628E-44 | IPR016180 |
| Pfam | PF00252 | Ribosomal protein L16p/L10e | 12 | 166 | 2.3E-36 | IPR016180 |
| SUPERFAMILY | SSF54686 | Ribosomal protein L16p/L10e | 4 | 173 | 8.77E-76 | IPR036920 |
| Gene3D | G3DSA:3.90.1170.10 | Ribosomal protein L10e/L16 | 1 | 217 | 5.1E-117 | IPR036920 |
| TIGRFAM | TIGR00279 | uL16_euk_arch: ribosomal protein uL16 | 1 | 174 | 1.6E-77 | IPR001197 |
| PIRSF | PIRSF005590 | RPL10a_RPL10e | 1 | 182 | 2.7E-95 | IPR001197 |
| ProSitePatterns | PS01257 | Ribosomal protein L10e signature. | 108 | 129 | - | IPR018255 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26910.1 | Ribosomal protein L16p/L10e family protein. | 0 |
| RefSeq | XP_017243822.1 | PREDICTED: 60S ribosomal protein L10-like [Daucus carota subsp. sativus] | 0 |
| Q9SPB3 | Large ribosomal subunit protein uL16 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J6XET6 | 60S ribosomal protein L10 OS=Thalictrum thalictroides OX=46969 GN=FRX31_003544 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 308.537872 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 262.999207 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 250.638824 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 241.278839 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 247.089569 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 277.623047 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 239.748657 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 236.648895 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 578.088013 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 585.78363 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 549.77063 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 637.860901 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 644.989929 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 674.803284 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 472.161499 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 513.19104 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 515.139282 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 383.060211 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 385.01825 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 497.858917 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 412.488434 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 542.250244 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 547.709717 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 562.37738 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 528.656921 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 373.313416 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 391.252502 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 406.615753 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 451.319702 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 675.324463 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 606.214661 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 650.74353 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 733.188416 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 682.049561 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 710.323669 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 591.537903 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 644.692505 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 704.941162 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 349.783478 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 208.71579 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 207.300247 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1356.052002 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 800.444336 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 448.879486 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 318.620392 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1195.710449 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 297.806366 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 649.344482 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 575.729187 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 538.347656 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 7 | jg24978, jg3087, jg31479, jg33138, jg35704, jg4071, jg8419 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21191, gene_5244 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah031383, Ah035994 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g157900, BVRB_7g157910 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20475, Sbi_jg2257, Sbi_jg23295, Sbi_jg34244 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17090, Seu_jg2498 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005983, GOSA_00014184 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl20749, Sgl24808, Sgl26131, Sgl29956, Sgl71003, Sgl74595 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008125, gene:ENSEOMG00000019396 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022530, CQ.Regalona.r1.1BG0001700 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30131770, pistato.v30178280 |
| Apiaceae | Apium graveolens | 2 | Ag2G01238, Ag3G01866 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702162, gene-LOC103722181 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.579.V1.1, AsparagusV1_08.3322.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G12676, Ftri11G29204, Ftri12G05425, Ftri9G20966 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G14320.1, AT1G26910.1, AT1G66580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008763m.g.v1.0, Thhalv10019112m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g12670.v2.2, Sp1g21870.v2.2, Sp5g24860.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g009370.2N, BniB03g005950.2N, BniB03g041220.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2470 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2716 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11800, gene.Cymno05g12890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0318s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g36800, gene.Thate05g04400, gene.Thate07g00540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3206, nbisL1-mrna-4138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1654 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00024824, Pov_00024826, Pov_00029216, Pov_00036719 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04520, Lb2G15317 |
| Poaceae | Echinochloa crus-galli | 12 | AH01.3750, AH05.1094, AH05.1108, AH07.971, BH01.4097 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0027850, gene-QOZ80_1BG0078020 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0026070.1, HORVU.MOREX.r3.4HG0345200.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009812, gene-QYE76_064275 |
| Poaceae | Oryza coarctata | 5 | Oco05G012730, Oco09G003260, Oco10G003220, Oco15G003360 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os05g07700.1, LOC_Os11g11390.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G163100, gene-BS78_01G364700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0306526, Pt_Chr0501700, Pt_Chr0501745 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G007860, Chr02G013350, Chr03G012990, Chr04G010580 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G209500, Tel2E01G1012100, Tel4E01G174000 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG014450, gene_TRIDC1BG019620 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G112500.1, TraesCS1B02G132700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb049570_P004, Zm00001eb150930_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15804, nbis-gene-3377, nbis-gene-51722 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g3034, Zma_g3693, Zma_g726, Zma_g8392 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG03.873, evm.TU.LG07.384, evm.TU.LG07.481 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g27450, gene.Posoc01g27460, gene.Posoc01g27470 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.42613.1, evm.TU.Scaffold_16_RagTag.702 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14004, nbisL1-mrna-24873 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3352, nbisL1-mrna-3353 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19107, nbisL1-mrna-19108 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000022l.63, evm.TU.utg000022l.146 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016201 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-148, nbisL1-mrna-149, nbisL1-mrna-23164 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10405, nbisL1-mrna-10406 |
| Salicaceae | Populus euphratica | 2 | populus_peu14521, populus_peu17033 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132602810, gene-LOC132605765, gene-LOC132605766 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI001735900, SOLCI002583300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107023517, gene-LOC107023542, gene-LOC107023544 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.6391_chr04_-, gene_1514, gene_17002 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2640, TC06G0834 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17340.v3.1 |