halophFGD

Basic Information

Locus ID: Ag2G01225

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Oligoribonuclease-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	79387875	79394277	-	Ag2G01225

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.67	28,487.28 Da	38.80	91.59	-0.48

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06135	Orn	73	245	6.07296E-92	IPR022894
Pfam	PF00929	Exonuclease	74	236	2.2E-33	IPR013520
SUPERFAMILY	SSF53098	Ribonuclease H-like	71	246	1.52E-41	IPR012337
Gene3D	G3DSA:3.30.420.10	-	65	249	8.4E-72	IPR036397
SMART	SM00479	exoiiiendus	72	246	7.1E-29	IPR013520
MobiDBLite	mobidb-lite	consensus disorder prediction	35	60	-	-

Gene Ontology

Molecular Function:

GO:0000175 (3'-5'-RNA exonuclease activity) GO:0003676 (nucleic acid binding)

KEGG Pathway

KO Term:

K13288 (oligoribonuclease [EC:3.1.-.-])

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26970.2	Polynucleotidyl transferase, ribonuclease H-like superfamily protein.
RefSeq	XP_017249874.1	PREDICTED: oligoribonuclease [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZVE0	Oligoribonuclease OS=Arabidopsis thaliana OX=3702 GN=At2g26970 PE=2 SV=2
TrEMBL	A0A161XUA8	Exonuclease domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018598 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	22.17767	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.287441	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	20.581049	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.203087	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.603493	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.178959	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	25.543436	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	24.67103	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.819246	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	11.829183	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	13.087322	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	16.364305	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.478048	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	15.763788	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.2545	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.054408	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	21.853935	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.555195	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	18.954199	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.407724	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	19.019079	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	23.259102	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.84503	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	25.747774	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	20.16828	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	19.322811	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.432558	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.32161	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	18.641844	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.328456		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	15.175827		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.662437		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.364473		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	18.524273		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	22.515547		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.493648		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.06966		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	9.440927		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	15.754661	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	12.1263	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	18.108166	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	32.840183	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	33.711185	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.247971	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	24.767603	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	41.752346	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	24.951796	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	34.30793	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	30.215837	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	31.057106	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35690, jg582
Aizoaceae	Mesembryanthemum crystallinum	1	gene_24904
Amaranthaceae	Atriplex hortensis	1	Ah025996
Amaranthaceae	Beta vulgaris	1	BVRB_6g141200
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg12764, Sbi_jg53134
Amaranthaceae	Salicornia europaea	1	Seu_jg8748
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018949
Amaranthaceae	Suaeda glauca	3	Sgl34107, Sgl34335, Sgl39735
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000001765, gene:ENSEOMG00000003310 ... gene:ENSEOMG00000026415
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0015380, CQ.Regalona.r1.6BG0016220
Apiaceae	Apium graveolens	1	Ag2G01225
Arecaceae	Cocos nucifera	1	COCNU_03G009340
Arecaceae	Phoenix dactylifera	2	gene-LOC103701944, gene-LOC103719005
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2914.V1.1, AsparagusV1_01.2916.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G28359, Ftri12G04113
Brassicaceae	Arabidopsis thaliana	1	AT2G26970.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10002092m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g08380.v2.2
Brassicaceae	Brassica nigra	1	BniB08g045590.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0670
Casuarinaceae	Casuarina glauca	1	Cgl05G0681
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g12670
Dunaliellaceae	Dunaliella salina	2	Dusal.0227s00021.v1.0, Dusal.3222s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g06670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2321
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG09.47
Plantaginaceae	Plantago ovata	3	Pov_00025406, Pov_00025413, Pov_00025514
Plumbaginaceae	Limonium bicolor	3	Lb2G13538, Lb6G30979, Lb6G30986
Poaceae	Echinochloa crus-galli	5	AH09.470, BH07.1694, BH09.512, CH07.1526, CH09.562
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0130410, gene-QOZ80_2BG0185620 ... gene-QOZ80_4AG0323380
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0159190.3, HORVU.MOREX.r3.6HG0631340.1
Poaceae	Lolium multiflorum	2	gene-QYE76_022655, gene-QYE76_043368
Poaceae	Oryza coarctata	3	Oco03G009800, Oco04G010120, Oco08G002930
Poaceae	Oryza sativa	2	LOC_Os02g26660.1, LOC_Os04g23830.1
Poaceae	Paspalum vaginatum	1	gene-BS78_09G015300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0303146, Pt_Chr0303198, Pt_Chr0404811, Pt_Chr0405866
Poaceae	Sporobolus alterniflorus	4	Chr09G016520, Chr13G013310, Chr25G013660, Chr30G013450
Poaceae	Thinopyrum elongatum	3	Tel2E01G491200, Tel6E01G735200, Tel6E01G739000
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG039170, gene_TRIDC2BG042170 ... gene_TRIDC6AG059240, gene_TRIDC6BG070040
Poaceae	Triticum aestivum	6	TraesCS2A02G272100.1, TraesCS2B02G290300.1 ... TraesCS2D02G271400.1, TraesCS6A02G402600.1, TraesCS6B02G445600.1, TraesCS6D02G386600.1
Poaceae	Zea mays	1	Zm00001eb240820_P001
Poaceae	Zoysia japonica	2	nbis-gene-19053, nbis-gene-53023
Poaceae	Zoysia macrostachya	2	Zma_g16303, Zma_g19438
Portulacaceae	Portulaca oleracea	3	evm.TU.LG03.89, evm.TU.LG13.607, evm.TU.LG21.300
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.451, evm.TU.Scaffold_13_RagTag.621
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-24298, nbisL1-mrna-30447
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14502
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19712
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000015l.346, evm.TU.utg000015l.347 ... evm.TU.utg000027l.294
Rhizophoraceae	Kandelia obovata	2	Maker00015792, Maker00018113
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4267, nbisL1-mrna-5692
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15171
Salicaceae	Populus euphratica	2	populus_peu02365, populus_peu02415
Solanaceae	Lycium barbarum	1	gene-LOC132631610
Solanaceae	Solanum chilense	2	SOLCI005024200, SOLCI007263400
Solanaceae	Solanum pennellii	2	gene-LOC107021618, gene-LOC107031283
Tamaricaceae	Reaumuria soongarica	1	STRG.22947_chr05_-
Tamaricaceae	Tamarix chinensis	1	TC01G2690
Zosteraceae	Zostera marina	1	Zosma01g39180.v3.1